Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02678 and BPUM_1543
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_02678___cheW.1.24716.seq
# -bsequence dna-align/BPUM_1543___cheW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02678___cheW-BPUM_1543___cheW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02678___cheW-BPUM_1543___cheW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02678___cheW
# 2: BPUM_1543___cheW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 502
# Identity: 336/502 (66.9%)
# Similarity: 336/502 (66.9%)
# Gaps: 71/502 (14.1%)
# Score: 1065.0
#
#
#=======================================
BSNT_02678___ 1 ATGACTGCAGAAATTAAAACAGGCGAAAAAATGATAGTCTTTATGGTAAA 50
||||.|.||||.||..||||.||||||||.|||||.||.|||||.|||||
BPUM_1543___c 1 ATGAGTACAGATATCCAAACTGGCGAAAAGATGATTGTGTTTATCGTAAA 50
BSNT_02678___ 51 TGGCAAAGAATATGCCATTTCCGTCACTCAG--GTGAAATCAATTGAAAA 98
....||||||||.||||||||.|| .|||| ||.||.||.||||||||
BPUM_1543___c 51 CAAAAAAGAATACGCCATTTCAGT--ATCAGAAGTAAAGTCCATTGAAAA 98
BSNT_02678___ 99 ATGGCAAAAGCCAACGAGGGTACCTGGCGTCGAACCATATATTTGCGGGG 148
||||||..||||.||.||.||.||||||||.|..||.|||||.|||||.|
BPUM_1543___c 99 ATGGCAGCAGCCGACAAGAGTCCCTGGCGTTGCCCCTTATATATGCGGTG 148
BSNT_02678___ 149 TAATCAATTTACGCGGGGTGGTGACTCCGGTTATTGATTTAAGAAAACGC 198
|.||.|||.|.|||||.||.|||||.||.||.||.|||.|||||
BPUM_1543___c 149 TTATTAATCTGCGCGGTGTCGTGACGCCTGTCATCGATCTAAGA------ 192
BSNT_02678___ 199 CTGA-ATTTG--CCAGAGT----ATGAAATTACCGATGAAACACGAATTA 241
.||| |.||| .|| ||| |.||||||||.|||||||||.||||.|
BPUM_1543___c 193 GTGAGACTTGGATCA-AGTGACAACGAAATTACAGATGAAACAAGAATGA 241
BSNT_02678___ 242 TCATT-----ATTGCTTATCGTGATATTGAAGTCGGCTGGATTGTGGATG 286
|.||| ||| |.||||.||||||||||||||||||||.||||
BPUM_1543___c 242 TTATTGTACAATT-----TGGTGACATTGAAGTCGGCTGGATTGTTGATG 286
BSNT_02678___ 287 AAGCGAACGATGTGATTACCGT---ACACGAAAGTGAAATAGAATCTGCT 333
|||||||.|||||.|||||.|| .||.||| |||.||||||||.||
BPUM_1543___c 287 AAGCGAATGATGTCATTACAGTCCATCAGGAA---GAAGTAGAATCTTCT 333
BSNT_02678___ 334 CCAGAAGGCGTTCAG-----AAAGATACGG-----ATGTGTCGATCGAAC 373
||.||| |||| ||||| |.|| |||.|| .||
BPUM_1543___c 334 CCTGAA-----TCAGCTGAAAAAGA-AGGGCAATCATGGGT------GAC 371
BSNT_02678___ 374 AG--ATTGTGAAACAAGAGAACAGACTCTTAAATATTATTGATGCGAACG 421
|| ||..|.||.||.||..|..|.||.||.|||||.|||.||.|....|
BPUM_1543___c 372 AGGTATCATTAAGCATGATCAGCGTCTATTTAATATCATTCATCCTGGTG 421
BSNT_02678___ 422 CGGTTTTGGATAAAGAATCATCTCAGTCC--GCTGTGCCCGATCAAGCTT 469
|.|||.|.|| .||||.| ||.| |.||..||.|.||| ||
BPUM_1543___c 422 CTGTTCTCGA-CAAGAGT-------GTTCAAGATGCACCTGTTCA---TT 460
BSNT_02678___ 470 AA 471
||
BPUM_1543___c 461 AA 462
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