Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02676 and BPUM_1541
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_02676___cheB.1.24716.seq
# -bsequence dna-align/BPUM_1541___cheB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02676___cheB-BPUM_1541___cheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02676___cheB-BPUM_1541___cheB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02676___cheB
# 2: BPUM_1541___cheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1173
# Identity: 732/1173 (62.4%)
# Similarity: 732/1173 (62.4%)
# Gaps: 198/1173 (16.9%)
# Score: 2152.0
#
#
#=======================================
BSNT_02676___ 1 TTGATTCGTGTGCTTGTAGTTGATGATTCAGCTTTTATGAGAAAAATGAT 50
.|||||.|.|||||||||||.|||||.||.||.||||||.|||||.|.||
BPUM_1541___c 1 ATGATTAGAGTGCTTGTAGTAGATGACTCGGCCTTTATGCGAAAACTCAT 50
BSNT_02676___ 51 AAGTGATTTTCTGA---CCGAGGAA-AAGCAGATAGAAGTAATCGGAACT 96
.|||||.||.||.| |||||.|| || ||||||||..|||||||.
BPUM_1541___c 51 TAGTGACTTCCTAACTGCCGAGCAAGAA----ATAGAAGTCGTCGGAACG 96
BSNT_02676___ 97 GCGAGAAACGGAGAAGAAGCGCTTAAGAA--GAT--------TGAATTAT 136
|||.||||.||.|||||.|| ||||| || ||| |||||
BPUM_1541___c 97 GCGCGAAATGGGGAAGATGC-CTTAA-AACGGATCAAGGAACTGAAT--- 141
BSNT_02676___ 137 TAAAACCGGATGTTATTACTCTTGATGTTGAAATGCCGGTCATGAATGGG 186
||.|||||..|.||..|.|||||.||||||||.||..|.|||||.
BPUM_1541___c 142 -----CCAGATGTCGTCACATTAGATGTGGAAATGCCTGTTTTAAATGGA 186
BSNT_02676___ 187 ACAGATACGCTCCGCA-------AAATTAT---TGA----GATTTATAAC 222
||||| .||| |||||.| ||| | |.|
BPUM_1541___c 187 ACAGA-------AGCATTAAAACAAATTCTGGCTGAACACG------ACC 223
BSNT_02676___ 223 TTGCCGGTCATTATGGTGTCTAGCCAGACCGAGAAAGGTAAAGAATGCAC 272
||||| ||.|||||||||||.||||||||..||.||||.|||||.|..||
BPUM_1541___c 224 TTGCC-GTAATTATGGTGTCAAGCCAGACAAAGCAAGGGAAAGATTTAAC 272
BSNT_02676___ 273 AATTAATTGTTTGGAGATCGGTGCCTTTGACTTTATCACAAAGCCATCAG 322
.||..||||.||.||..|.|||||.|||||||||.|||||||||||||||
BPUM_1541___c 273 CATCCATTGCTTAGAACTTGGTGCTTTTGACTTTGTCACAAAGCCATCAG 322
BSNT_02676___ 323 GTTCAATATCTCTGGATCTATACAAAATTAAAGAACAATTAGTTGAGCGT 372
|....||.||.||.|||.||.|||||.|.|.||..|||.|.||.|||||.
BPUM_1541___c 323 GAAGTATTTCACTTGATTTACACAAAGTAAGAGGCCAAATTGTAGAGCGG 372
BSNT_02676___ 373 GTCGTCGCGGCAGGACTTTCCGGCAAGCGGAAACGTCCTGTTTCCCAGAC 422
||..|.||||||||.|| |.||| |||||||..||
BPUM_1541___c 373 GTGCTTGCGGCAGGGCT----GTCAA--GGAAACGCACT----------- 405
BSNT_02676___ 423 AGTTCGGCCCGAACCTATTGTGCGTGCTGTCGT-TAAGCC--TGAATTAA 469
||| |||| .|.|.||.| |||||| || ||.||
BPUM_1541___c 406 ----------GAA------GTGC-CGGTTTCTTCTAAGCCGGTG-ATGAA 437
BSNT_02676___ 470 G----CAAAC-------CGAAACCTGGCACG---------------GG-- 491
| |||.| |.|.||||.||.|| ||
BPUM_1541___c 438 GCCGTCAATCCCAGTGGCTACACCTCGCCCGCAAGCAGTAAAAAGCGGCT 487
BSNT_02676___ 492 ----CAGACAAATTGTGTGTATCGGCACATCAACAGGCGGTCCACGAGCG 537
|.||.|.|||.|.|..|||||.||||||||.||.||.|||.|.||.
BPUM_1541___c 488 CACTCCGAAAGATTATTTCAATCGGAACATCAACGGGAGGGCCAAGGGCA 537
BSNT_02676___ 538 TTACAA-AAGGTGATACCGAAGCTCCCTAAAGA-TTTGAACGCACCAGTG 585
.|.||| .||..|.|| |||||||.||.||.|| .|.|||..|.|||.|
BPUM_1541___c 538 CTTCAACGAGTCGTTA-CGAAGCTGCCCAAGGACATAGAAGCCCCCATT- 585
BSNT_02676___ 586 GTTG-TCGTTCAGCACATGCCTGAAGGGTTTACTGCTTCTTTGGCTGATC 634
||| |.||.|||||.|||||.|.|||.|||||.||.||..|.|||..|.
BPUM_1541___c 586 -TTGATAGTGCAGCATATGCCGGCAGGATTTACGGCATCACTTGCTACTA 634
BSNT_02676___ 635 GGCTGAATCATTTATCTGACATTCAGGTAAAAGAAGCAAAAGATGGTGAA 684
||.|..|.|||||||||.|.|||..|.|.||||||||..|||||||.||
BPUM_1541___c 635 GGTTAGACCATTTATCTCAAATTTCGATTAAAGAAGCGCAAGATGGAGA- 683
BSNT_02676___ 685 GCA--GCTCTTAACGGCTGT-GTTTACATAGCACCGGGCGGAAAAAACAT 731
|| |||...||.|| .|| |.|||||||||.||.||.||||..||.||
BPUM_1541___c 684 -CATCGCTAAAAATGG-AGTAGCTTACATAGCGCCTGGTGGAATGAATAT 731
BSNT_02676___ 732 ATC-CGTTATTAAAAA--------------CAGC-GAAGGACTCCAGGTT 765
.|| |.|.||.||.|| ||.| ||..|.||||||
BPUM_1541___c 732 GTCACTTCATGAACAAGGGGCATCCTTAGTCATCAGACTGTCTCCAG--- 778
BSNT_02676___ 766 GTGCTTGATAACCATGACACCCCAAGCCGTCATAAACCATCTGCTGATTA 815
|.|||||...|||||||||.|||||.||||.|.|.||
BPUM_1541___c 779 -------------AAGACACGGAAAGCCGTCACAAACCTTCTGTTAACTA 815
BSNT_02676___ 816 TTTATT----CCGTTCTGTC-------GGGAAACTGACAGATTATGAAAA 854
|||||| .||.||.||| ||| |||.||.||
BPUM_1541___c 816 TTTATTTGAATCGATCAGTCATATAAAGGG-----------TTACGAGAA 854
BSNT_02676___ 855 AGTAGCGGTTATCATGACCGGAATGGGCAGTGACGGCACTGCTGGGCTAA 904
|.|.||.||.||.|||||.||.|||||.|||||||||||.|..||..|.|
BPUM_1541___c 855 AATTGCTGTCATTATGACAGGCATGGGTAGTGACGGCACAGAAGGTGTCA 904
BSNT_02676___ 905 AGGACATGCTAACAGCCGGCAATGTGAAAGCCATTGCGGAGTCTGAAGAA 954
|..|.|||.|..||..|||..||...||||.||||||.||....||||||
BPUM_1541___c 905 AAAAAATGGTCGCAAGCGGTCATACAAAAGTCATTGCAGAAAAAGAAGAA 954
BSNT_02676___ 955 TCTTGTGTCGTATACGGGATGCCAAAAGCTGCTGTTAAAGCGGGTCT--C 1002
||.|||||.||.|.|||.|||||.|||.|.|...|||||||.||.|| |
BPUM_1541___c 955 TCATGTGTTGTTTTCGGAATGCCTAAATCAGTCATTAAAGCAGGCCTTGC 1004
BSNT_02676___ 1003 ATTCATGAGATTAAACATGTGGAAGATATCGCAGCAT-CCATCACAAGCT 1051
| |||||.|..|..||||||||.||.|||||| ||| |.||.|.|||||
BPUM_1541___c 1005 A--CATGAAACAAGGCATGTGGATGACATCGCA-CATGCAATTATAAGCT 1051
BSNT_02676___ 1052 GTGTGAAAAAAGAGAGGGTGTGA 1074
...|||||||||||||||.||||
BPUM_1541___c 1052 CCATGAAAAAAGAGAGGGCGTGA 1074
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