Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02675 and BPUM_1540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_02675___ylxH.1.24716.seq
# -bsequence dna-align/BPUM_1540___ylxH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02675___ylxH-BPUM_1540___ylxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02675___ylxH-BPUM_1540___ylxH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02675___ylxH
# 2: BPUM_1540___ylxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity: 576/1039 (55.4%)
# Similarity: 576/1039 (55.4%)
# Gaps: 281/1039 (27.0%)
# Score: 1520.0
#
#
#=======================================
BSNT_02675___ 1 ---ATGAA--CAGATATGACCAAGCAGCAACTTTACGGGCGAAAATGGAA 45
||||| | |||||||||||.|..||| ||
BPUM_1540___y 1 ATGATGAAGCC-----TGACCAAGCAGAAGGTTT--------------AA 31
BSNT_02675___ 46 AAACGTGAGCGCGTTCTGCCAATGGTTTAT-------TCACA-------- 80
.|| |||.|||||..|.|| || |||||
BPUM_1540___y 32 GAA----AGCTCGTTCAACAAA------ATCAAACGATCACACCAGCTCC 71
BSNT_02675___ 81 -------AAAAGCG--------AAGACACTTGCTGTCATCAGCGGCAAGG 115
|.||||| ||.||..||||||||||.|||||.||.|
BPUM_1540___y 72 TCTTGGTATAAGCGGACAGGCAAAAACCATTGCTGTCATGAGCGGTAAAG 121
BSNT_02675___ 116 GCGGTGTCGGAAAATCCAATATTACCTTAAATATGGCACTTGCGCTC-CA 164
||||.||.||||||||.|||.|.||..|.|||||||||||..|..|| ||
BPUM_1540___y 122 GCGGGGTTGGAAAATCGAATTTGACGCTGAATATGGCACTATCTATCGCA 171
BSNT_02675___ 165 GGATAAAGGTAA--GAAGGTGCTGCTCATCGACCTTGATATCGGGATGGG 212
.||..|||||| || |||.|..||||||||||||||.|.||.|||||
BPUM_1540___y 172 -AATGCAGGTAAACGA--GTGTTAGTCATCGACCTTGATTTTGGTATGGG 218
BSNT_02675___ 213 GAACATTGATATATTAATAGGAAATTCATCGTCTGCCACGATAATTGATG 262
|||.||||||||.|||.||||.||..|||||.||..|.|.||..|.||||
BPUM_1540___y 219 GAATATTGATATTTTACTAGGGAAAACATCGACTAGCTCTATTTTAGATG 268
BSNT_02675___ 263 TTTT-------AACCGATCGT---AAGC--CTTTG-CTC----------C 289
||.| ||...|||.| |||| ||.|| ||| |
BPUM_1540___y 269 TTCTCGTCAGGAAGAAATCCTTCCAAGCGGCTATGACTCAAGGAACGAAC 318
BSNT_02675___ 290 AGTCATTATCCATTGGCCCAAAGGGTTTGCGGTATATATCAGGGGGAACC 339
|..|.|||| ||.||.||.||.||||.|
BPUM_1540___y 319 AACCTTTAT-----------------------TACATTTCTGGCGGAAGC 345
BSNT_02675___ 340 GGTCTTGATGTGATGTTTCAGCTCGATCAGAGAA-----AATGGACGTTT 384
||.|||||...|.||||| || .|.|||.|| |||||.||||.
BPUM_1540___y 346 GGACTTGAACAGCTGTTT----TC-TTTAGATAAAGATCAATGGTCGTTC 390
BSNT_02675___ 385 TTT-----GCCAAT-----GAACTTTCTCATGCATTAAGCCAGTTCGATT 424
||| |..||| ||| |.||||| |.|.||.||||
BPUM_1540___y 391 TTTCTAGAGGAAATGGAAAGAA-----TGATGCA-----CGACTTTGATT 430
BSNT_02675___ 425 ATGTGCTGTTTGATATGGGAGCGGGTTTATCAAAAGATCAACTGCCTTTT 474
.|.|..|.|||||||||||.||.|||||.||||||||||||||.||||||
BPUM_1540___y 431 GTATCTTCTTTGATATGGGGGCTGGTTTGTCAAAAGATCAACTACCTTTT 480
BSNT_02675___ 475 ATTTTATCAGCAGAAGATATTTTGATTATAACAACTCCCGAGCCGACGGC 524
.||||||||||||.|||..||.|..||.|.|||||.||.||.||.||..|
BPUM_1540___y 481 GTTTTATCAGCAGGAGAAGTTGTAGTTGTGACAACGCCGGAACCAACATC 530
BSNT_02675___ 525 CATTTTGGACGCATACAGCGCTGTCAAGCACTTGG----------TTTTG 564
.||..||||.||.||||||||..|.||.||.||.| .||||
BPUM_1540___y 531 AATCATGGATGCCTACAGCGCCATTAAACATTTAGCGATTCATCAGTTTG 580
BSNT_02675___ 565 ACAGAAAATAAGCTTT--CAATGAAGGTGGCTGTCAATCGGTG------- 605
||.||.||.| .|||.| .||||||.|||||
BPUM_1540___y 581 ------AACAATCTGTGCAAATCA------TTGTCAACCGGTGTAAAACC 618
BSNT_02675___ 606 CCGTGACCAAAAGGAAGGGCTTGACGCTTTTGCCCGCCTCTCCCGTACAA 655
||||.| ||||||...||..| ||..||.| ||
BPUM_1540___y 619 CCGTCA-------GAAGGGTCAGAAAC------------CTATCGGA-AA 648
BSNT_02675___ 656 T------------TCATATGTTTTTGGATGTTCAGGTTCAG--------- 684
| |||.||..|| |.|||| |||
BPUM_1540___y 649 TTAGCAGGAGTCGTCACATCATT-----TCTTCA----CAGAAAACTAGT 689
BSNT_02675___ 685 -TTTGCCGGTTCCGTTTCTGACGATGTGATCGTGAG-----CAAAGCGGT 728
|||||.|||.|.||..|.|| |||||.||.| .|||||.||
BPUM_1540___y 690 ATTTGCTGGTGCTGTCCCGGA-----TGATCCTGCGGTTCCAAAAGCAGT 734
BSNT_02675___ 729 TGTCGAACAGGTTCCTTTTTTCATAAAAAGC--CCTC-----AGGC---- 767
.|..|||||..||||.|||| |||..|||| |||| ||||
BPUM_1540___y 735 GGCTGAACAAATTCCATTTT--ATATGAAGCAGCCTCATTCAAGGCTGAG 782
BSNT_02675___ 768 -AAAAGCCAGCCG-GTCAGTCCGTATTTTAGCGG--ACGCCTTGTTTGGA 813
|||| || .|.|| ||..|.|||| ||.|.||.| .|
BPUM_1540___y 783 TAAAA------CGATTAAG-----ATGCTGGCGGAAACACTTTAT---CA 818
BSNT_02675___ 814 AGAGAAGAAACGAGA--CACAAAGAAGACAAACAGACATTTATTGAGAAA 861
|.||.|||.|.|||| ||||.|| |||..|.||.||.|||||.||.||.
BPUM_1540___y 819 ACAGCAGATAAGAGAGGCACAGAG-AGAGCAGCATACGTTTATAGATAAG 867
BSNT_02675___ 862 TTATCTTCTTTTTT---AATGAGGA----GGGCTTAA-- 891
||.||.|||||||| ||.||||| ||.||.|.
BPUM_1540___y 868 TTGTCCTCTTTTTTTAAAAGGAGGAAGGTGGACTCATGA 906
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