Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02673 and BPUM_1539
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02673___flhF.1.24716.seq
# -bsequence dna-align/BPUM_1539___flhF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02673___flhF-BPUM_1539___flhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02673___flhF-BPUM_1539___flhF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02673___flhF
# 2: BPUM_1539___flhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity: 744/1210 (61.5%)
# Similarity: 744/1210 (61.5%)
# Gaps: 203/1210 (16.8%)
# Score: 1939.5
#
#
#=======================================
BSNT_02673___ 1 ATGAAAATAAAAAAATTTACTGCTGCTTCAATGCAAGAAGCTGCACTTCT 50
||||||||.||||||.|.||.||...|||||||||.|||||..|..|||.
BPUM_1539___f 1 ATGAAAATGAAAAAAATCACAGCGAATTCAATGCAGGAAGCAACGATTCA 50
BSNT_02673___ 51 CATCAGAAAAGAGTTAGGTAATGAAGCGGTCATATTAAATTCAAAAAAAA 100
.||.||..|..||.|.||.||.||.||.|||||.||||||||.||||...
BPUM_1539___f 51 AATTAGGCAGCAGCTTGGGAAGGATGCCGTCATCTTAAATTCCAAAACCG 100
BSNT_02673___ 101 TTAAAAAGCGAAA---AT--GGTTT---GGCCTCATCAACAAGCCTGCTG 142
||...||.||||| || ||||| | .|.||.||| .|| |
BPUM_1539___f 101 TTGTGAAACGAAAGCTATTCGGTTTAAAG----AAACAGCAA--ATG--G 142
BSNT_02673___ 143 TTGAAGTAATCGCCGTATTGGATCAGGACTTTCTTGAGAAAAAAACGCCT 192
|||||||.||.||.||..|||||||.||.||| |||.|||..||
BPUM_1539___f 143 TTGAAGTGATTGCAGTGCTGGATCAAGATTTT-----GAAGAAAGAGC-- 185
BSNT_02673___ 193 CAG----AAGG----CAG-CTGAACCGAAACAAAC-----------ATT- 221
| |||| ||| |||..|| | |||
BPUM_1539___f 186 --GGGTAAAGGTGGACAGCCTGCGCC--------CCCTCTTCCAGTATTT 225
BSNT_02673___ 222 ---AAAAACTCCGGTCAGCAG-------TCCGA---AAATA--------- 249
||||| || ||||| .|||| |||.|
BPUM_1539___f 226 CCGAAAAA----GG--AGCAGGTTCAACACCGACCTAAAGAGCCGTCTCT 269
BSNT_02673___ 250 -------GAGG-AGAGAA--CA-TATCCCCCTCAAATTCCGGCGCAACAG 288
|||| ||.||| || || ||.|.||||..||.|.||..|.|.
BPUM_1539___f 270 TGCTCCTGAGGCAGTGAAACCAGTA-CCTCTTCAAGCTCAGCCGTTAGAA 318
BSNT_02673___ 289 GA-GCTAGG--TGATTTTTCAGCATATCAATCTG---TACTTCCTGAGCC 332
.| ||.||| ||| .|.|||| .||| ||.|.|||||.||
BPUM_1539___f 319 TATGCGAGGAATGA----GCGGCAT-----GCTGGTATATTGCCTGACCC 359
BSNT_02673___ 333 GCT----GCGAAAAGCAGAAAAGCTTTTGCAAGAAACAGGGATCAAAGAG 378
.|| || ||..|...||||||| ||| ||||||| .|
BPUM_1539___f 360 TCTCATGGC-AATCGATCAAAAGCT-------GAA----GGATCAA--GG 395
BSNT_02673___ 379 TCTACGAAAACGAACACTC-TGAAAAAATTGCTTC----GCTTCTCTGTT 423
||| .||..|.| .||.|| |||..|| |||.|| | |||.||
BPUM_1539___f 396 TCT-TGATGATG-CCATTCGTGACGAA--TGCCTCAAAGG----TCTTTT 437
BSNT_02673___ 424 GAAGCAGGCGGCT-TGACTGAAGAAAATGTTGTCGGCAAACTTCAGGAAA 472
.|.|.|||..||| |.|..||||| ||||| ||||..||.
BPUM_1539___f 438 AACGAAGGGCGCTGTCAAGGAAGA-----------GCAAA-TTCAAAAAG 475
BSNT_02673___ 473 TACT-------ATGC-----GATACGCTGCCCGCAGCAGACAAGTGGCAG 510
.||| .||| ||||.|||| |||...||.||...|| |.
BPUM_1539___f 476 AACTTGAACAACTGCTGACAGATATGCTG-CCGTCTCACACTTCTG--AT 522
BSNT_02673___ 511 GAGCC---AATTCATTCAAAATATATCGTTCTCTTTGGTTCAACAGGGGC 557
||.|| .||||.|||.|||||.||.||.||.||||||||.||.|||||
BPUM_1539___f 523 GATCCGATGATTCGTTCTAAATACATTGTGCTGTTTGGTTCGACTGGGGC 572
BSNT_02673___ 558 TGGTAAAACAACTACACTGGCTAAACTCGCAGCCATATCTATGC--TTGA 605
||||||||||||.||..|.||.||.|||||.||||.|.| .|| ||.|
BPUM_1539___f 573 TGGTAAAACAACAACGATTGCAAAGCTCGCTGCCAAAAC--GGCCATTCA 620
BSNT_02673___ 606 AAAACATAAAAAAATCGCTTTTATTACAACAGATACGTATCGTATTGCAG 655
.||.||.||.|||||||||||||||||||||||||||||.||.||.||||
BPUM_1539___f 621 GAAGCAAAAGAAAATCGCTTTTATTACAACAGATACGTACCGAATAGCAG 670
BSNT_02673___ 656 CTGTTGAACAGTTGAAAACATACGCTGAACTGCTGCAGGCTCCTCTGGAA 705
|..|.|||||..||||||||||.||.|||||.||..|.||.||.||.||.
BPUM_1539___f 671 CAATCGAACAACTGAAAACATATGCAGAACTACTTAATGCACCGCTTGAG 720
BSNT_02673___ 706 GTTTGCTATACAAAAGAAGAATTTCAGCAGGCGAAGGAGTTATTTTCTGA 755
|||||.|||.|.|.|||.||.|||....|.||..|.|||..||||...||
BPUM_1539___f 721 GTTTGTTATTCGAGAGAGGATTTTGTAAAAGCTCAAGAGACATTTAAAGA 770
BSNT_02673___ 756 GTATGATCATGTGTTTGTTGATACAGCCGGAAGAAACTTCAAGGACCCGC 805
||||||||||.|.||.||.||.|||||.||..|.|||||.||.|| ..
BPUM_1539___f 771 GTATGATCATATTTTCGTAGACACAGCGGGTCGTAACTTTAAAGA---AG 817
BSNT_02673___ 806 AA---TACATTGATGAACTGAAAGAAACGATTCCTTTTGA-GAGCAGCAT 851
|| ||.||..|.||.||||.|||.|..|||||.||||| || .|||||
BPUM_1539___f 818 AAGCGTATATCAAAGAGCTGACAGACATCATTCCATTTGATGA-AAGCAT 866
BSNT_02673___ 852 TC--AGTCATTTCTTGTTTTATCCGCGACTGCAAAATATGAAGATATG-A 898
|| ||| ||.||.||..|....|||||..||||.|||.|.||.||| |
BPUM_1539___f 867 TCAAAGT--TTCCTAGTGATGAGTGCGACCTCAAAGTATCAGGACATGAA 914
BSNT_02673___ 899 AGCATATTGTCAAACGGTTTTCATC-CGTCCCTGTCAATCAGTATATTTT 947
||| .||.||.|||| |||||.|.| |||..|..||.||||.|.||||||
BPUM_1539___f 915 AGC-CATGGTGAAAC-GTTTTGAACACGTTTCAATCGATCAATTTATTTT 962
BSNT_02673___ 948 TACGAAAATAGATGAAAC-GACTTCCTTAGGTTCTGTATTTAATATACTG 996
|||.|||.|||||||||| ||| .|..|.||..|..|.|||.|.||..|.
BPUM_1539___f 963 TACAAAAGTAGATGAAACAGAC-ACGATGGGCACCATTTTTCAAATCATT 1011
BSNT_02673___ 997 GCAGAATCAAAAATAGGTGTCGGGTTTATGACAAACGGACAGAATGTGCC 1046
|||||.||..||||.||..|.||.|||.|.|||||.||.||.|||||.||
BPUM_1539___f 1012 GCAGACTCTCAAATTGGACTTGGCTTTTTAACAAATGGTCAAAATGTTCC 1061
BSNT_02673___ 1047 TGAGGATATAC---AGACTGTATCTCCACTTGGTTTTGTGAGGATG--CT 1091
|||||||||.| || |..|||||.||||..||....|||||| ||
BPUM_1539___f 1062 TGAGGATATTCTTGAG---GGCTCTCCTCTTGAATTAACAAGGATGGTCT 1108
BSNT_02673___ 1092 GTGCAGATGA 1101
|.|| ||||
BPUM_1539___f 1109 -TACA-ATGA 1116
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