Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02670 and BPUM_1536
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02670.1.24716.seq
# -bsequence dna-align/BPUM_1536___fliR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02670-BPUM_1536___fliR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02670-BPUM_1536___fliR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02670
# 2: BPUM_1536___fliR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 797
# Identity: 452/797 (56.7%)
# Similarity: 452/797 (56.7%)
# Gaps: 229/797 (28.7%)
# Score: 1647.5
#
#
#=======================================
BSNT_02670 0 -------------------------------------------------- 0
BPUM_1536___f 1 ATGTCAATCATAGAATTATTCCCTGCTTTTCTATTAGTTTTTATTCGGAT 50
BSNT_02670 0 -------------------------------------------------- 0
BPUM_1536___f 51 CACCGCTTTTTTTGTAACAGTACCGCTTTTAGCGCATAGAACGATCCCAG 100
BSNT_02670 0 -------------------------------------------------- 0
BPUM_1536___f 101 CTGTACACAGAGTTGGATTCTCACTGTTTTTAGCCGTGATTAGTTTTAGC 150
BSNT_02670 1 ---------------------------------------------ATGCT 5
|||||
BPUM_1536___f 151 ACAATTAAGGAACCGCCAGCACTCGACATAGACGGTCTTTATATGATGCT 200
BSNT_02670 6 TTTGGCGTTTAAAGAAGCTTTGGTCGGCCTATGT-CTGGGTTTAATTGCT 54
| |||.|.||||||||..|||||||.|| |.| ||.|||||.|||||.
BPUM_1536___f 201 T---GCGGTGAAAGAAGCAATGGTCGGACT-TCTACTTGGTTTGATTGCA 246
BSNT_02670 55 TATATGATGATTGCCGCAGTGCAGATTGCCGGCTCGTTTATTGATTTTCA 104
|||||.|||.|..||||.||.||.|||||||||||.||||||||||||||
BPUM_1536___f 247 TATATCATGGTGTCCGCTGTTCAAATTGCCGGCTCATTTATTGATTTTCA 296
BSNT_02670 105 AATGGGATTTTCAATAGCAAACGTTATTGATCCGCAAACCGGTGCACAAA 154
||||||.|||.|.||.||.||.||.||||||||||||||.||.|||||||
BPUM_1536___f 297 AATGGGGTTTGCGATCGCCAATGTAATTGATCCGCAAACAGGGGCACAAA 346
BSNT_02670 155 GTCCGTTGATTGGCCAGTTTATCTATACGATGGCACTTT--TGTTTATGC 202
..|||.||||.||.||.|||.|.|||||| |.|||.|| |.||.||||
BPUM_1536___f 347 CGCCGCTGATGGGGCAATTTTTTTATACG--GTCACATTGCTATTGATGC 394
BSNT_02670 203 TG---AGTGTCAATGCCCACCATTTGTTGCTGGATGGTATTTACTACAGC 249
|| |.| |||||.||.||..||.||||.|||||.||.||.|||||.
BPUM_1536___f 395 TGGCAACT---AATGCACATCACCTGCTGCTTGATGGAATCTATTACAGT 441
BSNT_02670 250 TTTCAGTATATTTCAGTTGATCAG---GCATTTCCGAATTTCGGCGATGA 296
|||||.||||||.||||||||||| ||| |.||||||||||..|||
BPUM_1536___f 442 TTTCAATATATTGCAGTTGATCAGTACGCA---CTGAATTTCGGCAGTGA 488
BSNT_02670 297 AAAGTTTGCCTATTTTATTGCGAAAAGCTTTAATGCAATGTTTATTATCG 346
|...|||||.|||||||||||.||.|||||.||...||||||.|||||.|
BPUM_1536___f 489 ATCTTTTGCTTATTTTATTGCAAAGAGCTTCAACCAAATGTTCATTATTG 538
BSNT_02670 347 CTTTTCAAATGTCAGCGCCGGTTGTGGCCAGCTTGTTTCTAGTTGATTTA 396
|.||||||||.|||||.||.|||||.||.|||||||||.|.||.|||||.
BPUM_1536___f 539 CCTTTCAAATCTCAGCACCAGTTGTCGCTAGCTTGTTTTTGGTCGATTTG 588
BSNT_02670 397 GCATTAGGCATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGT 446
|||||||||||.|||||.|||||.||.||||||.|.||.||.|||||.||
BPUM_1536___f 589 GCATTAGGCATTGTGGCACGAACAGTCCCGCAGATGAACGTTTTTGTTGT 638
BSNT_02670 447 CGGTCTCCCT-TTAAAGATCGCTGTCAGTTTCATCATGCTCATTGTATGT 495
|||.||.||| ||||| ||.|.|||.|||||.||.|||.|.||..|.|||
BPUM_1536___f 639 CGGACTTCCTATTAAA-ATGGGTGTGAGTTTTATTATGATTATCATCTGT 687
BSNT_02670 496 ATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTA-ACGATTG 544
|||..|||.|||||.|..|||||||..|| |.||.||.| |||||||
BPUM_1536___f 688 ATGGGCGTCATCTTTGGAGTTGTCCAAAA----TACATTTGATACGATTG 733
BSNT_02670 545 AA---ACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAA--- 585
.| ||.|||.|||||.|.||||||||||||||||.|||.|.|
BPUM_1536___f 734 TACTCACCATGAGGAATTTCTTAGCATTGGTCGGTGGTTCGTCATGA 780
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