Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02670 and BPUM_1536

See Amino acid alignment / Visit BSNT_02670 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_02670.1.24716.seq
#    -bsequence dna-align/BPUM_1536___fliR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02670-BPUM_1536___fliR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02670-BPUM_1536___fliR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02670
# 2: BPUM_1536___fliR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 797
# Identity:     452/797 (56.7%)
# Similarity:   452/797 (56.7%)
# Gaps:         229/797 (28.7%)
# Score: 1647.5
# 
#
#=======================================

BSNT_02670         0 --------------------------------------------------      0
                                                                       
BPUM_1536___f      1 ATGTCAATCATAGAATTATTCCCTGCTTTTCTATTAGTTTTTATTCGGAT     50

BSNT_02670         0 --------------------------------------------------      0
                                                                       
BPUM_1536___f     51 CACCGCTTTTTTTGTAACAGTACCGCTTTTAGCGCATAGAACGATCCCAG    100

BSNT_02670         0 --------------------------------------------------      0
                                                                       
BPUM_1536___f    101 CTGTACACAGAGTTGGATTCTCACTGTTTTTAGCCGTGATTAGTTTTAGC    150

BSNT_02670         1 ---------------------------------------------ATGCT      5
                                                                  |||||
BPUM_1536___f    151 ACAATTAAGGAACCGCCAGCACTCGACATAGACGGTCTTTATATGATGCT    200

BSNT_02670         6 TTTGGCGTTTAAAGAAGCTTTGGTCGGCCTATGT-CTGGGTTTAATTGCT     54
                     |   |||.|.||||||||..|||||||.|| |.| ||.|||||.|||||.
BPUM_1536___f    201 T---GCGGTGAAAGAAGCAATGGTCGGACT-TCTACTTGGTTTGATTGCA    246

BSNT_02670        55 TATATGATGATTGCCGCAGTGCAGATTGCCGGCTCGTTTATTGATTTTCA    104
                     |||||.|||.|..||||.||.||.|||||||||||.||||||||||||||
BPUM_1536___f    247 TATATCATGGTGTCCGCTGTTCAAATTGCCGGCTCATTTATTGATTTTCA    296

BSNT_02670       105 AATGGGATTTTCAATAGCAAACGTTATTGATCCGCAAACCGGTGCACAAA    154
                     ||||||.|||.|.||.||.||.||.||||||||||||||.||.|||||||
BPUM_1536___f    297 AATGGGGTTTGCGATCGCCAATGTAATTGATCCGCAAACAGGGGCACAAA    346

BSNT_02670       155 GTCCGTTGATTGGCCAGTTTATCTATACGATGGCACTTT--TGTTTATGC    202
                     ..|||.||||.||.||.|||.|.||||||  |.|||.||  |.||.||||
BPUM_1536___f    347 CGCCGCTGATGGGGCAATTTTTTTATACG--GTCACATTGCTATTGATGC    394

BSNT_02670       203 TG---AGTGTCAATGCCCACCATTTGTTGCTGGATGGTATTTACTACAGC    249
                     ||   |.|   |||||.||.||..||.||||.|||||.||.||.|||||.
BPUM_1536___f    395 TGGCAACT---AATGCACATCACCTGCTGCTTGATGGAATCTATTACAGT    441

BSNT_02670       250 TTTCAGTATATTTCAGTTGATCAG---GCATTTCCGAATTTCGGCGATGA    296
                     |||||.||||||.|||||||||||   |||   |.||||||||||..|||
BPUM_1536___f    442 TTTCAATATATTGCAGTTGATCAGTACGCA---CTGAATTTCGGCAGTGA    488

BSNT_02670       297 AAAGTTTGCCTATTTTATTGCGAAAAGCTTTAATGCAATGTTTATTATCG    346
                     |...|||||.|||||||||||.||.|||||.||...||||||.|||||.|
BPUM_1536___f    489 ATCTTTTGCTTATTTTATTGCAAAGAGCTTCAACCAAATGTTCATTATTG    538

BSNT_02670       347 CTTTTCAAATGTCAGCGCCGGTTGTGGCCAGCTTGTTTCTAGTTGATTTA    396
                     |.||||||||.|||||.||.|||||.||.|||||||||.|.||.|||||.
BPUM_1536___f    539 CCTTTCAAATCTCAGCACCAGTTGTCGCTAGCTTGTTTTTGGTCGATTTG    588

BSNT_02670       397 GCATTAGGCATCGTGGCTCGAACTGTTCCGCAGTTAAATGTATTTGTGGT    446
                     |||||||||||.|||||.|||||.||.||||||.|.||.||.|||||.||
BPUM_1536___f    589 GCATTAGGCATTGTGGCACGAACAGTCCCGCAGATGAACGTTTTTGTTGT    638

BSNT_02670       447 CGGTCTCCCT-TTAAAGATCGCTGTCAGTTTCATCATGCTCATTGTATGT    495
                     |||.||.||| ||||| ||.|.|||.|||||.||.|||.|.||..|.|||
BPUM_1536___f    639 CGGACTTCCTATTAAA-ATGGGTGTGAGTTTTATTATGATTATCATCTGT    687

BSNT_02670       496 ATGTCCGTTATCTTCGTCGTTGTCCGGAATGTTTTCAGTTTA-ACGATTG    544
                     |||..|||.|||||.|..|||||||..||    |.||.||.| |||||||
BPUM_1536___f    688 ATGGGCGTCATCTTTGGAGTTGTCCAAAA----TACATTTGATACGATTG    733

BSNT_02670       545 AA---ACGATGCGGAATCTTTTAGCATTGGTCGGTGTTTCTTAA---    585
                     .|   ||.|||.|||||.|.||||||||||||||||.|||.|.|   
BPUM_1536___f    734 TACTCACCATGAGGAATTTCTTAGCATTGGTCGGTGGTTCGTCATGA    780


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.