Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02667 and BPUM_1535

See Amino acid alignment / Visit BSNT_02667 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_02667___fliQ.1.24716.seq
#    -bsequence dna-align/BPUM_1535___fliQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02667___fliQ-BPUM_1535___fliQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02667___fliQ-BPUM_1535___fliQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02667___fliQ
# 2: BPUM_1535___fliQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 274
# Identity:     185/274 (67.5%)
# Similarity:   185/274 (67.5%)
# Gaps:          32/274 (11.7%)
# Score: 645.5
# 
#
#=======================================

BSNT_02667___      1 ------------------------ATGGCGGAAAAAGCCGTATA---CGT     23
                                             |||||.||||.|.|.||.||   .||
BPUM_1535___f      1 ATGAGTTCAGAATTTGTCATTACGATGGCTGAAAGATCAGTGTATGTGGT     50

BSNT_02667___     24 AACGCTGATGATCAGCGGGCCATTATTGGCTATTGCT-TTACTGGTCGGT     72
                     |..|||  || ||||.|||||..|..|.||..|.||| ||| |.||.||.
BPUM_1535___f     51 ATTGCT--TG-TCAGTGGGCCGCTTCTAGCGCTCGCTCTTA-TTGTGGGA     96

BSNT_02667___     73 TTAATTGTCAGCATATTTCAGGCGACAACTCAAATCCAGGAACAGACTTT    122
                     .|.||||||||..||||||||||.|||||.||.||.||.||||||||..|
BPUM_1535___f     97 CTGATTGTCAGTGTATTTCAGGCAACAACCCAGATTCAAGAACAGACGCT    146

BSNT_02667___    123 GGCGTTTATTCCGAAAATCGTGGCGGTTCTCCTGGCTCTCATTTTTTTTG    172
                     .|||||.|||||.|||||.||.||.|||||..|.|..||..||.|.||||
BPUM_1535___f    147 TGCGTTCATTCCTAAAATTGTTGCAGTTCTTATTGGACTTGTTGTGTTTG    196

BSNT_02667___    173 GTCCGTGGATGCTGTCGACGATTCTTTCATTTACAACAGAGCTGTTTTCT    222
                     ||||.||||||||||||||.|||.|.||.|||||.|||||||||||.||.
BPUM_1535___f    197 GTCCATGGATGCTGTCGACCATTGTGTCCTTTACGACAGAGCTGTTCTCG    246

BSNT_02667___    223 AATTTAAATCGTTTTGCAGGGTAA    246
                     ||||||.||||.||||||||.|||
BPUM_1535___f    247 AATTTAGATCGATTTGCAGGTTAA    270


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