Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02666 and BPUM_1534
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02666___fliP.1.24716.seq
# -bsequence dna-align/BPUM_1534___fliP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02666___fliP-BPUM_1534___fliP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02666___fliP-BPUM_1534___fliP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02666___fliP
# 2: BPUM_1534___fliP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity: 523/683 (76.6%)
# Similarity: 523/683 (76.6%)
# Gaps: 34/683 ( 5.0%)
# Score: 1951.5
#
#
#=======================================
BSNT_02666___ 1 ATGAATGAGTTTATAAATATTTTCAGTTCAAGC-GATCCGGAAAACGTA- 48
||||||||||||||..||.|.||.|.|||.||| ||.|.||.|| ||
BPUM_1534___f 1 ATGAATGAGTTTATCGATTTATTTAATTCCAGCGGAGCAGGGAA---TAT 47
BSNT_02666___ 49 -AGTTCGACTGTTAAATTACTATTATTGTTAACTGTATTTTCAGTGGCGC 97
|||.||.||||.....|.||.|||.|.|||||.||||||||.||.||.|
BPUM_1534___f 48 TAGTACGTCTGTCCGTCTTCTTTTACTTTTAACCGTATTTTCTGTTGCAC 97
BSNT_02666___ 98 CTGGAATATTGATTCTTATGACTTGTTTTACTCGCATCGTCATTGTTCTG 147
|.||.||..|.|||.|.|||||.||||||||.||.||.||.|||||.||.
BPUM_1534___f 98 CAGGCATTCTCATTTTAATGACATGTTTTACACGAATTGTGATTGTACTT 147
BSNT_02666___ 148 TCATTTGTCAGAACTTCACTTGCGACGCAA-TCTATGCCCCCAAACCAGG 196
|||||.||.|||||.||||||||.|| ||| ||.|||||.||||||||.|
BPUM_1534___f 148 TCATTCGTTAGAACATCACTTGCAAC-CAACTCAATGCCTCCAAACCAAG 196
BSNT_02666___ 197 TTCTTATCGGGCTTGCGCTGTTTTTAACATTTTTTATCATGGCTCCTACT 246
|.|||.|.||||||||..|||||.|.|||||.|||||||||||.||.||.
BPUM_1534___f 197 TACTTGTTGGGCTTGCTTTGTTTCTCACATTCTTTATCATGGCACCCACG 246
BSNT_02666___ 247 TTTTCAGAAATTAATAAAGAAGCGCTGACCCC----ATTAATG--GACA- 289
||.|||||.|||||||||||.||.||.||.|| .|.|||| ||||
BPUM_1534___f 247 TTCTCAGAGATTAATAAAGAGGCACTTACGCCGCTTTTAAATGATGACAT 296
BSNT_02666___ 290 ---ACAAAATC-AGCTTGGATGAAGCGTATACGAAAGCTGAGGAACCGAT 335
||..|||| ||||| ||||| |||||.||.|..||.||
BPUM_1534___f 297 TACACTCAATCAAGCTT--ATGAA---------AAAGCCGAAGTGCCAAT 335
BSNT_02666___ 336 TAAAGAATTTATGAGTAAACACACAAGGCAGAAGGATCTGGCGCTGTTTA 385
||||||.||||||||||||||.||.||.|||||||||.||||..|.|||.
BPUM_1534___f 336 TAAAGAGTTTATGAGTAAACATACGAGACAGAAGGATTTGGCTTTATTTC 385
BSNT_02666___ 386 TGAATTACGCGAAAATGGATAAACCTGAATCATTAAAGGATATTCCGTTA 435
|.|.||||||.||||||||||.|||||||||..||||.||||||||||||
BPUM_1534___f 386 TTAGTTACGCAAAAATGGATACACCTGAATCGATAAAAGATATTCCGTTA 435
BSNT_02666___ 436 ACAACAATGGTTCCGGCTTTTGCCATATCGGAGCTTAAA-ACAGCATTTC 484
||..|.|||||.||.||.|||||.||.||.|| .||||| ||.|||||||
BPUM_1534___f 436 ACGGCGATGGTACCCGCATTTGCAATTTCAGA-ATTAAAGACGGCATTTC 484
BSNT_02666___ 485 AAATAGGTTTTATGATTTTTATCCCTTTTTTAATTATAGATATGGTAGTG 534
||||.|||||.|||||.|||||.||.|||||||||||.||||||||.||.
BPUM_1534___f 485 AAATTGGTTTCATGATCTTTATTCCATTTTTAATTATTGATATGGTCGTC 534
BSNT_02666___ 535 GCGAGCGTCTTGATGTCAATGGGAATGATGATGCTGCCTCCAGTTATGAT 584
||.||.|||.|||||||||||||.|||||||||||.|||||.||||||||
BPUM_1534___f 535 GCAAGTGTCCTGATGTCAATGGGGATGATGATGCTTCCTCCGGTTATGAT 584
BSNT_02666___ 585 TTCTCTGCCCTTT-AAAATATTACTTTTTGTTTTGGTAGACGGCTGGTAT 633
.||.|| |||||| ||||||||..|.||||||||.||.||.||.||||||
BPUM_1534___f 585 ATCGCT-CCCTTTCAAAATATTGTTATTTGTTTTAGTCGATGGATGGTAT 633
BSNT_02666___ 634 TTAATTGTGAAATCTTTGCTTCAGAGCTTTTAG 666
||.|||||.|||||||||||.||.|||||||||
BPUM_1534___f 634 TTGATTGTCAAATCTTTGCTGCAAAGCTTTTAG 666
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