Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02666 and BPUM_1534

See Amino acid alignment / Visit BSNT_02666 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_02666___fliP.1.24716.seq
#    -bsequence dna-align/BPUM_1534___fliP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02666___fliP-BPUM_1534___fliP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02666___fliP-BPUM_1534___fliP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02666___fliP
# 2: BPUM_1534___fliP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity:     523/683 (76.6%)
# Similarity:   523/683 (76.6%)
# Gaps:          34/683 ( 5.0%)
# Score: 1951.5
# 
#
#=======================================

BSNT_02666___      1 ATGAATGAGTTTATAAATATTTTCAGTTCAAGC-GATCCGGAAAACGTA-     48
                     ||||||||||||||..||.|.||.|.|||.||| ||.|.||.||   || 
BPUM_1534___f      1 ATGAATGAGTTTATCGATTTATTTAATTCCAGCGGAGCAGGGAA---TAT     47

BSNT_02666___     49 -AGTTCGACTGTTAAATTACTATTATTGTTAACTGTATTTTCAGTGGCGC     97
                      |||.||.||||.....|.||.|||.|.|||||.||||||||.||.||.|
BPUM_1534___f     48 TAGTACGTCTGTCCGTCTTCTTTTACTTTTAACCGTATTTTCTGTTGCAC     97

BSNT_02666___     98 CTGGAATATTGATTCTTATGACTTGTTTTACTCGCATCGTCATTGTTCTG    147
                     |.||.||..|.|||.|.|||||.||||||||.||.||.||.|||||.||.
BPUM_1534___f     98 CAGGCATTCTCATTTTAATGACATGTTTTACACGAATTGTGATTGTACTT    147

BSNT_02666___    148 TCATTTGTCAGAACTTCACTTGCGACGCAA-TCTATGCCCCCAAACCAGG    196
                     |||||.||.|||||.||||||||.|| ||| ||.|||||.||||||||.|
BPUM_1534___f    148 TCATTCGTTAGAACATCACTTGCAAC-CAACTCAATGCCTCCAAACCAAG    196

BSNT_02666___    197 TTCTTATCGGGCTTGCGCTGTTTTTAACATTTTTTATCATGGCTCCTACT    246
                     |.|||.|.||||||||..|||||.|.|||||.|||||||||||.||.||.
BPUM_1534___f    197 TACTTGTTGGGCTTGCTTTGTTTCTCACATTCTTTATCATGGCACCCACG    246

BSNT_02666___    247 TTTTCAGAAATTAATAAAGAAGCGCTGACCCC----ATTAATG--GACA-    289
                     ||.|||||.|||||||||||.||.||.||.||    .|.||||  |||| 
BPUM_1534___f    247 TTCTCAGAGATTAATAAAGAGGCACTTACGCCGCTTTTAAATGATGACAT    296

BSNT_02666___    290 ---ACAAAATC-AGCTTGGATGAAGCGTATACGAAAGCTGAGGAACCGAT    335
                        ||..|||| |||||  |||||         |||||.||.|..||.||
BPUM_1534___f    297 TACACTCAATCAAGCTT--ATGAA---------AAAGCCGAAGTGCCAAT    335

BSNT_02666___    336 TAAAGAATTTATGAGTAAACACACAAGGCAGAAGGATCTGGCGCTGTTTA    385
                     ||||||.||||||||||||||.||.||.|||||||||.||||..|.|||.
BPUM_1534___f    336 TAAAGAGTTTATGAGTAAACATACGAGACAGAAGGATTTGGCTTTATTTC    385

BSNT_02666___    386 TGAATTACGCGAAAATGGATAAACCTGAATCATTAAAGGATATTCCGTTA    435
                     |.|.||||||.||||||||||.|||||||||..||||.||||||||||||
BPUM_1534___f    386 TTAGTTACGCAAAAATGGATACACCTGAATCGATAAAAGATATTCCGTTA    435

BSNT_02666___    436 ACAACAATGGTTCCGGCTTTTGCCATATCGGAGCTTAAA-ACAGCATTTC    484
                     ||..|.|||||.||.||.|||||.||.||.|| .||||| ||.|||||||
BPUM_1534___f    436 ACGGCGATGGTACCCGCATTTGCAATTTCAGA-ATTAAAGACGGCATTTC    484

BSNT_02666___    485 AAATAGGTTTTATGATTTTTATCCCTTTTTTAATTATAGATATGGTAGTG    534
                     ||||.|||||.|||||.|||||.||.|||||||||||.||||||||.||.
BPUM_1534___f    485 AAATTGGTTTCATGATCTTTATTCCATTTTTAATTATTGATATGGTCGTC    534

BSNT_02666___    535 GCGAGCGTCTTGATGTCAATGGGAATGATGATGCTGCCTCCAGTTATGAT    584
                     ||.||.|||.|||||||||||||.|||||||||||.|||||.||||||||
BPUM_1534___f    535 GCAAGTGTCCTGATGTCAATGGGGATGATGATGCTTCCTCCGGTTATGAT    584

BSNT_02666___    585 TTCTCTGCCCTTT-AAAATATTACTTTTTGTTTTGGTAGACGGCTGGTAT    633
                     .||.|| |||||| ||||||||..|.||||||||.||.||.||.||||||
BPUM_1534___f    585 ATCGCT-CCCTTTCAAAATATTGTTATTTGTTTTAGTCGATGGATGGTAT    633

BSNT_02666___    634 TTAATTGTGAAATCTTTGCTTCAGAGCTTTTAG    666
                     ||.|||||.|||||||||||.||.|||||||||
BPUM_1534___f    634 TTGATTGTCAAATCTTTGCTGCAAAGCTTTTAG    666


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