Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02652 and BPUM_1525
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_02652.1.24716.seq
# -bsequence dna-align/BPUM_1525___fliK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02652-BPUM_1525___fliK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02652-BPUM_1525___fliK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02652
# 2: BPUM_1525___fliK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1652
# Identity: 867/1652 (52.5%)
# Similarity: 867/1652 (52.5%)
# Gaps: 508/1652 (30.8%)
# Score: 1846.0
#
#
#=======================================
BSNT_02652 1 GTGAAGCTGCTTGA-ATTAGCGGGACCTTTGCTGCAAAC--CACAACGGG 47
||||||||..|.|| ||| |||.|.||.|.||||.| |.||| ||
BPUM_1525___f 1 GTGAAGCTATTGGATATT----GGAGCCTTACAGCAATCGTCTCAA--GG 44
BSNT_02652 48 T-TCTGCCGCTAAAAA----------CATGAAAAGTAGC----CAAG-GA 81
| ||| ||..|..|| |.|||| | |||| |.
BPUM_1525___f 45 TCTCT--CGGGACCAAAGGGGAGCGGCGTGAA------CTCTGCAAGCGG 86
BSNT_02652 82 GTT-TTTCAAAACTGGCTTATGTCTGAGGCTGGATTGAAGGAACTCTCAG 130
||| |||.||.|.|..|||| ||.|| |.||| |.|.||
BPUM_1525___f 87 GTTGTTTAAACAATTACTTA--------GCGGG---GCAGG--CGCGCA- 122
BSNT_02652 131 AACAAG-GAAAG-GGTACTCCT-AATTCCGAAGATCAGC----------- 166
||| ||||| ||| ||..| |||.||| ||| ||||
BPUM_1525___f 123 ---AAGCGAAAGCGGT-CTTGTGAATGCCG-AGA-CAGCGGGTGCTACTC 166
BSNT_02652 167 -TTTTAGCA--GATGCGCTTAAAAAGATCGGTGAATGGCT-AAATGCAAG 212
||..|.|| |||||..|..|||..||.|...|||||.| |||| ||
BPUM_1525___f 167 TTTCCATCAATGATGCAATGCAAATCATTGAAAAATGGATGAAAT-CA-- 213
BSNT_02652 213 TCCTGAAG-----ATCAAGACAAACAAAATGCGAATCTT----------T 247
||||||| ||| |||.|| ||.||| |
BPUM_1525___f 214 -CCTGAAGAAGGAATC--GACGAA---------AACCTTCTTAGCGCCCT 251
BSNT_02652 248 TGCAAACA-TTAAGCAAACTGACAGGG--AAACAATTGGATGCGAATGC- 293
| |||||| || ||.|| ||||..||| ||.|
BPUM_1525___f 252 T-CAAACACTT-----------CAAGGTCAAACGCTTG-------ATTCA 282
BSNT_02652 294 TCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTAAATC-AAAAATGTCA 342
|||| ||.|.| |.||..|.| ||| ||||...|| |||||||
BPUM_1525___f 283 TCTG---ATCTCG---AGTCACTAG-AAG-AGTTGTTTCAAAAAATG--- 321
BSNT_02652 343 GGCGGGACGGATCAGTTGCTCACAGATACGGAGAAAATCTTTTCAGAAGC 392
|.||| ||| ||..|||||.|| |.||||
BPUM_1525___f 322 --------GAATC-----CTC-CATTTACGGTGA----------ACAAGC 347
BSNT_02652 393 T-AAAACGGCTCTGAGTGCCAATGATTCTGCTTCTG-ACATTAATGGAGC 440
| |.|| |||| ||||||| |||| |..||||
BPUM_1525___f 348 TGATAA-----------GCCA--------GCTTCTGAACAT--AGTGAGC 376
BSNT_02652 441 ACTGAAGTCTGATACAGAGCAATCAAATCATGAAAATGAAGTATCCGAGC 490
| .||.||||| ||.
BPUM_1525___f 377 A------GCTCATACA-------------------------------AGT 389
BSNT_02652 491 CTGCTAAAGAGCTTATCTATAT-CCAGATGTTCATT----AGCCAGCTCG 535
|..|| ||.||| ||| |||..||.|||.| |||| ||||
BPUM_1525___f 390 CCACT-------TTTTCT-TATACCAACTGCTCAATCAACAGCC-GCTC- 429
BSNT_02652 536 TAGAAGGGAATAATCTGACTGATCGCGGGAATGGCAATGA-AGCTCATGC 584
|.|| .|||| ||||.|| ||..||.|.
BPUM_1525___f 430 ------------AGCT--TTGAT----------GCAAAGATAGTGCAAGA 455
BSNT_02652 585 CATTTACCAAAATGG---AGA--TCAATTC-CTTTCTGCATTAGAAAAGA 628
.|||.|...|||.|| ||| || |||| |||||| ||.|||| |
BPUM_1525___f 456 TATTGAAGCAAAGGGTCAAGATTTC-ATTCACTTTCT---TTCGAAA--A 499
BSNT_02652 629 AGGGTGTATCTCAACAAATAATTCAGGATCTTAAACAGCAAATATT---- 674
|.||.|||..|.|..||.|.||||||.|..|.|||.|||||.|.||
BPUM_1525___f 500 ATGGGGTAGATGAGAAACTGATTCAGCAAGTAAAAGAGCAATTTTTCTCG 549
BSNT_02652 675 -------------CACTAAAGCTG-AGTCAA-GT-TCAAAACTTTACTCG 708
|||.||||||| |.|||| || |||||
BPUM_1525___f 550 CAGCAGGGTTCAGCACCAAAGCTGAATTCAATGTCTCAAA---------- 589
BSNT_02652 709 ATGACAGCGTCAGAGCTGAAA-AGTTT--TCAAAGCTTAATGGATCAAAT 755
|| ||||||||| |.||| ||| .|||||.||.||.||
BPUM_1525___f 590 --------GT--GAGCTGAAACACTTTAATCA---GTTAATCGACCATAT 626
BSNT_02652 756 GTCTATGCTTCCTCA-----AAAAGGGAC---CAAAGA-ATGGAGTTTAG 796
| ||| .|| |||||||.| |||||| .||.||.|| |
BPUM_1525___f 627 G---ATG-----GCAAATGCAAAAGGGTCAGACAAAGAGTTGAAGATT-G 667
BSNT_02652 797 CTGAAAGCCAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCA 846
||..|.|..||.|.|||| ..|||.|.|| || ||..|
BPUM_1525___f 668 CTTTAGGAGAGTTAAAAG---AATTGGTCTC-------TC-----CAAGA 702
BSNT_02652 847 CAAGACT------TTGGGAAGCGTGTTCTCACA--------CCGCTCTCG 882
|||||.| |||..|..|.|| ||.| ||.||||.|
BPUM_1525___f 703 CAAGAATCTACTCTTGCTACTCCTG----CAAAAGGGGCTGCCTCTCTTG 748
BSNT_02652 883 CAGAGTTTATCCAGCAAAAATGCATCGGATGTT-TCTGGAAGTATTCAGC 931
.|..|.|||| |||||| |||.||| || .|||.|...|||
BPUM_1525___f 749 AATGGCTTAT----CAAAAA------GGAAGTTGTC--AAAGGACAAAGC 786
BSNT_02652 932 ----CTGTA---------GATAGTAAATCAGGACTCCAAATGCTGTTTTC 968
|||.| ||.| |||..|..||| ||.|.|||.||..|
BPUM_1525___f 787 ACTGCTGCACCTGCTTCTGAAA--AAACGATCACT-CATACGCTTTTGCC 833
BSNT_02652 969 GGGTTATCGGAGCATAGGAGGAG----TACAAACACTTG--ATCTGCAGC 1012
.||| |||| ||.|| |.||| .|| |||.|||||
BPUM_1525___f 834 AGGT--------CATA--AGCAGTTTTTTCAA----CTGCAATCAGCAGC 869
BSNT_02652 1013 AGATGT-CATCTG--ATATACCAAATACCGAAACAAA------AACGGTG 1053
...||| ||.|.| |.|.||| ||.||...||| ||||||.
BPUM_1525___f 870 TCCTGTCCAGCAGGCACAAACC----ACTGATGAAAAGCCGGGAACGGTT 915
BSNT_02652 1054 GCTGATCAAGTGATTAATGCGTGGAAGCAGATGAAATATACGCCTTTCGG 1103
|.|.|.|||.|..|.|||.||||||||||.|||||||..|||||.||.||
BPUM_1525___f 916 GATCAGCAAATTCTAAATACGTGGAAGCAAATGAAATTCACGCCATTTGG 965
BSNT_02652 1104 CAGATCGACGGGAAGTTTCACTATTCGGCTGAACCCTGAACATTTAGGAT 1153
||..||.|..|||.|.||.||..||||..|.||.||.|||.||.|.||||
BPUM_1525___f 966 CAACTCAAGCGGACGCTTTACAGTTCGATTAAATCCAGAAAATCTCGGAT 1015
BSNT_02652 1154 TTGTCACAATCAAGCTGACAAATGAAAATGGAATGTTTCAGAGTAAAATC 1203
||.||||.||..|||||||.||..|||||||.||||.|..|||||||||.
BPUM_1525___f 1016 TTATCACGATTCAGCTGACGAAGCAAAATGGTATGTATGCGAGTAAAATT 1065
BSNT_02652 1204 ATAGCATCTAGCCAATCAGCAAAAGAATTGCTTGAACAGCATCTTCCTCA 1253
|.|||.||.|..|||.||||||||||..|||||||.||.||.||.||.||
BPUM_1525___f 1066 ACAGCTTCGACACAAGCAGCAAAAGAGCTGCTTGAGCATCACCTGCCGCA 1115
BSNT_02652 1254 GCTGAAGCAATCATTGCCGAATATGGCCGTCCAAATTGACCGTTT----- 1298
|||.||.||..|..|.|||||||||.|.||.|||.|.||||||||
BPUM_1525___f 1116 GCTCAAACAGGCGCTTCCGAATATGTCGGTTCAAGTGGACCGTTTCCATA 1165
BSNT_02652 1299 TA-CTCTTCCGGTCCAAAGCGGGGATCAGCCGATATACGGCCAGCTTGCT 1347
|| |.|||| ...|||| .||.|||.||.|||..|||||..||...
BPUM_1525___f 1166 TACCACTTC--AATCAAA----TGAACAGTCGTTATTTGGCCAATTTAAC 1209
BSNT_02652 1348 GATGAACAGAAAC-AGCAGCAAGAG------GGGCA-------------- 1376
||.|| |||| ||||||||.|| |||||
BPUM_1525___f 1210 GAAGA----AAACAAGCAGCAACAGTCAAAAGGGCATCATTTCCAGAACC 1255
BSNT_02652 1377 -----GAGACAGCAAAGACAGAAAAAGCAATCAAATGATTTTGGCGATCT 1421
|| |||| |||..||.|.||.|| |||.|
BPUM_1525___f 1256 CTGATGA-ACAG--------GAAGCAGAATTCCAA----------GATGT 1286
BSNT_02652 1422 GCTCGATGAAGTGTCGATGGTTGAAATGGAGGAAGAAGA--ATGA----- 1464
.||.|||| .|.|.|.|||.|.| ||.|||||||| |.||
BPUM_1525___f 1287 ACTGGATG--CTCTTGTTGGGTCA----GATGAAGAAGAGGAGGAAATCT 1330
BSNT_02652 1464 -- 1464
BPUM_1525___f 1331 AA 1332
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