Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02652 and BPUM_1525

See Amino acid alignment / Visit BSNT_02652 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_02652.1.24716.seq
#    -bsequence dna-align/BPUM_1525___fliK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02652-BPUM_1525___fliK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02652-BPUM_1525___fliK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02652
# 2: BPUM_1525___fliK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1652
# Identity:     867/1652 (52.5%)
# Similarity:   867/1652 (52.5%)
# Gaps:         508/1652 (30.8%)
# Score: 1846.0
# 
#
#=======================================

BSNT_02652         1 GTGAAGCTGCTTGA-ATTAGCGGGACCTTTGCTGCAAAC--CACAACGGG     47
                     ||||||||..|.|| |||    |||.|.||.|.||||.|  |.|||  ||
BPUM_1525___f      1 GTGAAGCTATTGGATATT----GGAGCCTTACAGCAATCGTCTCAA--GG     44

BSNT_02652        48 T-TCTGCCGCTAAAAA----------CATGAAAAGTAGC----CAAG-GA     81
                     | |||  ||..|..||          |.||||      |    |||| |.
BPUM_1525___f     45 TCTCT--CGGGACCAAAGGGGAGCGGCGTGAA------CTCTGCAAGCGG     86

BSNT_02652        82 GTT-TTTCAAAACTGGCTTATGTCTGAGGCTGGATTGAAGGAACTCTCAG    130
                     ||| |||.||.|.|..||||        ||.||   |.|||  |.|.|| 
BPUM_1525___f     87 GTTGTTTAAACAATTACTTA--------GCGGG---GCAGG--CGCGCA-    122

BSNT_02652       131 AACAAG-GAAAG-GGTACTCCT-AATTCCGAAGATCAGC-----------    166
                        ||| ||||| ||| ||..| |||.||| ||| ||||           
BPUM_1525___f    123 ---AAGCGAAAGCGGT-CTTGTGAATGCCG-AGA-CAGCGGGTGCTACTC    166

BSNT_02652       167 -TTTTAGCA--GATGCGCTTAAAAAGATCGGTGAATGGCT-AAATGCAAG    212
                      ||..|.||  |||||..|..|||..||.|...|||||.| |||| ||  
BPUM_1525___f    167 TTTCCATCAATGATGCAATGCAAATCATTGAAAAATGGATGAAAT-CA--    213

BSNT_02652       213 TCCTGAAG-----ATCAAGACAAACAAAATGCGAATCTT----------T    247
                      |||||||     |||  |||.||         ||.|||          |
BPUM_1525___f    214 -CCTGAAGAAGGAATC--GACGAA---------AACCTTCTTAGCGCCCT    251

BSNT_02652       248 TGCAAACA-TTAAGCAAACTGACAGGG--AAACAATTGGATGCGAATGC-    293
                     | |||||| ||           ||.||  ||||..|||       ||.| 
BPUM_1525___f    252 T-CAAACACTT-----------CAAGGTCAAACGCTTG-------ATTCA    282

BSNT_02652       294 TCTGCAAATGTTGCAAAATCTTTTGCAAGCAGTTAAATC-AAAAATGTCA    342
                     ||||   ||.|.|   |.||..|.| ||| ||||...|| |||||||   
BPUM_1525___f    283 TCTG---ATCTCG---AGTCACTAG-AAG-AGTTGTTTCAAAAAATG---    321

BSNT_02652       343 GGCGGGACGGATCAGTTGCTCACAGATACGGAGAAAATCTTTTCAGAAGC    392
                             |.|||     ||| ||..|||||.||          |.||||
BPUM_1525___f    322 --------GAATC-----CTC-CATTTACGGTGA----------ACAAGC    347

BSNT_02652       393 T-AAAACGGCTCTGAGTGCCAATGATTCTGCTTCTG-ACATTAATGGAGC    440
                     | |.||           ||||        ||||||| ||||  |..||||
BPUM_1525___f    348 TGATAA-----------GCCA--------GCTTCTGAACAT--AGTGAGC    376

BSNT_02652       441 ACTGAAGTCTGATACAGAGCAATCAAATCATGAAAATGAAGTATCCGAGC    490
                     |      .||.|||||                               ||.
BPUM_1525___f    377 A------GCTCATACA-------------------------------AGT    389

BSNT_02652       491 CTGCTAAAGAGCTTATCTATAT-CCAGATGTTCATT----AGCCAGCTCG    535
                     |..||       ||.||| ||| |||..||.|||.|    |||| |||| 
BPUM_1525___f    390 CCACT-------TTTTCT-TATACCAACTGCTCAATCAACAGCC-GCTC-    429

BSNT_02652       536 TAGAAGGGAATAATCTGACTGATCGCGGGAATGGCAATGA-AGCTCATGC    584
                                 |.||  .||||          ||||.|| ||..||.|.
BPUM_1525___f    430 ------------AGCT--TTGAT----------GCAAAGATAGTGCAAGA    455

BSNT_02652       585 CATTTACCAAAATGG---AGA--TCAATTC-CTTTCTGCATTAGAAAAGA    628
                     .|||.|...|||.||   |||  || |||| ||||||   ||.||||  |
BPUM_1525___f    456 TATTGAAGCAAAGGGTCAAGATTTC-ATTCACTTTCT---TTCGAAA--A    499

BSNT_02652       629 AGGGTGTATCTCAACAAATAATTCAGGATCTTAAACAGCAAATATT----    674
                     |.||.|||..|.|..||.|.||||||.|..|.|||.|||||.|.||    
BPUM_1525___f    500 ATGGGGTAGATGAGAAACTGATTCAGCAAGTAAAAGAGCAATTTTTCTCG    549

BSNT_02652       675 -------------CACTAAAGCTG-AGTCAA-GT-TCAAAACTTTACTCG    708
                                  |||.||||||| |.|||| || |||||          
BPUM_1525___f    550 CAGCAGGGTTCAGCACCAAAGCTGAATTCAATGTCTCAAA----------    589

BSNT_02652       709 ATGACAGCGTCAGAGCTGAAA-AGTTT--TCAAAGCTTAATGGATCAAAT    755
                             ||  ||||||||| |.|||  |||   .|||||.||.||.||
BPUM_1525___f    590 --------GT--GAGCTGAAACACTTTAATCA---GTTAATCGACCATAT    626

BSNT_02652       756 GTCTATGCTTCCTCA-----AAAAGGGAC---CAAAGA-ATGGAGTTTAG    796
                     |   |||     .||     |||||||.|   |||||| .||.||.|| |
BPUM_1525___f    627 G---ATG-----GCAAATGCAAAAGGGTCAGACAAAGAGTTGAAGATT-G    667

BSNT_02652       797 CTGAAAGCCAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCA    846
                     ||..|.|..||.|.||||   ..|||.|.||       ||     ||..|
BPUM_1525___f    668 CTTTAGGAGAGTTAAAAG---AATTGGTCTC-------TC-----CAAGA    702

BSNT_02652       847 CAAGACT------TTGGGAAGCGTGTTCTCACA--------CCGCTCTCG    882
                     |||||.|      |||..|..|.||    ||.|        ||.||||.|
BPUM_1525___f    703 CAAGAATCTACTCTTGCTACTCCTG----CAAAAGGGGCTGCCTCTCTTG    748

BSNT_02652       883 CAGAGTTTATCCAGCAAAAATGCATCGGATGTT-TCTGGAAGTATTCAGC    931
                     .|..|.||||    ||||||      |||.||| ||  .|||.|...|||
BPUM_1525___f    749 AATGGCTTAT----CAAAAA------GGAAGTTGTC--AAAGGACAAAGC    786

BSNT_02652       932 ----CTGTA---------GATAGTAAATCAGGACTCCAAATGCTGTTTTC    968
                         |||.|         ||.|  |||..|..||| ||.|.|||.||..|
BPUM_1525___f    787 ACTGCTGCACCTGCTTCTGAAA--AAACGATCACT-CATACGCTTTTGCC    833

BSNT_02652       969 GGGTTATCGGAGCATAGGAGGAG----TACAAACACTTG--ATCTGCAGC   1012
                     .|||        ||||  ||.||    |.|||    .||  |||.|||||
BPUM_1525___f    834 AGGT--------CATA--AGCAGTTTTTTCAA----CTGCAATCAGCAGC    869

BSNT_02652      1013 AGATGT-CATCTG--ATATACCAAATACCGAAACAAA------AACGGTG   1053
                     ...||| ||.|.|  |.|.|||    ||.||...|||      ||||||.
BPUM_1525___f    870 TCCTGTCCAGCAGGCACAAACC----ACTGATGAAAAGCCGGGAACGGTT    915

BSNT_02652      1054 GCTGATCAAGTGATTAATGCGTGGAAGCAGATGAAATATACGCCTTTCGG   1103
                     |.|.|.|||.|..|.|||.||||||||||.|||||||..|||||.||.||
BPUM_1525___f    916 GATCAGCAAATTCTAAATACGTGGAAGCAAATGAAATTCACGCCATTTGG    965

BSNT_02652      1104 CAGATCGACGGGAAGTTTCACTATTCGGCTGAACCCTGAACATTTAGGAT   1153
                     ||..||.|..|||.|.||.||..||||..|.||.||.|||.||.|.||||
BPUM_1525___f    966 CAACTCAAGCGGACGCTTTACAGTTCGATTAAATCCAGAAAATCTCGGAT   1015

BSNT_02652      1154 TTGTCACAATCAAGCTGACAAATGAAAATGGAATGTTTCAGAGTAAAATC   1203
                     ||.||||.||..|||||||.||..|||||||.||||.|..|||||||||.
BPUM_1525___f   1016 TTATCACGATTCAGCTGACGAAGCAAAATGGTATGTATGCGAGTAAAATT   1065

BSNT_02652      1204 ATAGCATCTAGCCAATCAGCAAAAGAATTGCTTGAACAGCATCTTCCTCA   1253
                     |.|||.||.|..|||.||||||||||..|||||||.||.||.||.||.||
BPUM_1525___f   1066 ACAGCTTCGACACAAGCAGCAAAAGAGCTGCTTGAGCATCACCTGCCGCA   1115

BSNT_02652      1254 GCTGAAGCAATCATTGCCGAATATGGCCGTCCAAATTGACCGTTT-----   1298
                     |||.||.||..|..|.|||||||||.|.||.|||.|.||||||||     
BPUM_1525___f   1116 GCTCAAACAGGCGCTTCCGAATATGTCGGTTCAAGTGGACCGTTTCCATA   1165

BSNT_02652      1299 TA-CTCTTCCGGTCCAAAGCGGGGATCAGCCGATATACGGCCAGCTTGCT   1347
                     || |.||||  ...||||    .||.|||.||.|||..|||||..||...
BPUM_1525___f   1166 TACCACTTC--AATCAAA----TGAACAGTCGTTATTTGGCCAATTTAAC   1209

BSNT_02652      1348 GATGAACAGAAAC-AGCAGCAAGAG------GGGCA--------------   1376
                     ||.||    |||| ||||||||.||      |||||              
BPUM_1525___f   1210 GAAGA----AAACAAGCAGCAACAGTCAAAAGGGCATCATTTCCAGAACC   1255

BSNT_02652      1377 -----GAGACAGCAAAGACAGAAAAAGCAATCAAATGATTTTGGCGATCT   1421
                          || ||||        |||..||.|.||.||          |||.|
BPUM_1525___f   1256 CTGATGA-ACAG--------GAAGCAGAATTCCAA----------GATGT   1286

BSNT_02652      1422 GCTCGATGAAGTGTCGATGGTTGAAATGGAGGAAGAAGA--ATGA-----   1464
                     .||.||||  .|.|.|.|||.|.|    ||.||||||||  |.||     
BPUM_1525___f   1287 ACTGGATG--CTCTTGTTGGGTCA----GATGAAGAAGAGGAGGAAATCT   1330

BSNT_02652      1464 --   1464
                       
BPUM_1525___f   1331 AA   1332


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