Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02642 and BPUM_1518

See Amino acid alignment / Visit BSNT_02642 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_02642___fliE.1.24716.seq
#    -bsequence dna-align/BPUM_1518___fliE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02642___fliE-BPUM_1518___fliE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02642___fliE-BPUM_1518___fliE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02642___fliE
# 2: BPUM_1518___fliE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 349
# Identity:     223/349 (63.9%)
# Similarity:   223/349 (63.9%)
# Gaps:          59/349 (16.9%)
# Score: 684.5
# 
#
#=======================================

BSNT_02642___      1 GTGATTAATGCAATTTCTCCTTTTCAGGTTCAAAATACTCAAAACACTCA     50
                     .||.||||.|||||.||||||||.|||.|||||..|.||||         
BPUM_1518___f      1 TTGGTTAACGCAATATCTCCTTTCCAGCTTCAAGCTGCTCA---------     41

BSNT_02642___     51 AAATGCAA-CAAATCAAGTAAACAATAGCCAAAAAACAGAT----TCTTC     95
                         |||| |||.|.||.|.|..||| ||          ||    |.|||
BPUM_1518___f     42 ----GCAAGCAAGTGAATTGACTAAT-GC----------ATCGTCTGTTC     76

BSNT_02642___     96 ----------------AAATCAAACAAGCTTTTCGGAGCTTTTAAAAAAC    129
                                     ||.||||||.|..||.||.||..|..|.||.||.
BPUM_1518___f     77 ATGCGGCTGCACCTAAAAGTCAAACGAATTTCTCTGATGTGCTGAAGAAT    126

BSNT_02642___    130 TCTATT-AGTTCGTTAAATGAGTCCCAAGTAGCT----TCTGA-CAACAT    173
                     ||.||| || .|.||||||.|.||.|    ||||    ||.|| ||..||
BPUM_1518___f    127 TCCATTGAG-GCATTAAATCAATCAC----AGCTAAAATCAGACCAGTAT    171

BSNT_02642___    174 GACTAATGC-CTTGGCTGCAGGAAAAGATGTAAATCTTGATGAGGTCATG    222
                      ||.||||| ||| ||...||||||||||||.|||||.|||||.||||||
BPUM_1518___f    172 -ACAAATGCACTT-GCACAAGGAAAAGATGTCAATCTCGATGAAGTCATG    219

BSNT_02642___    223 ATCGCTGCTCAAAAAGCTAGCATCTCTCTAACTGCAGCAACAGAGTTCCG    272
                     ||.||..|.||||||||.||..|..|.||.||.||.|||||.|||||.||
BPUM_1518___f    220 ATTGCCTCGCAAAAAGCGAGTGTGACACTCACAGCTGCAACGGAGTTTCG    269

BSNT_02642___    273 CAATAAAGCTGTGGAAGCTTATCAGGAGATTATGAGAATGCAAATGTAG    321
                     .||||||||.||.|||||.||.||.|||||||||||||||||.||||||
BPUM_1518___f    270 AAATAAAGCGGTCGAAGCGTACCAAGAGATTATGAGAATGCAGATGTAG    318


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.