Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02630 and BPUM_1509
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_02630___smf.1.24716.seq
# -bsequence dna-align/BPUM_1509___smf.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02630___smf-BPUM_1509___smf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02630___smf-BPUM_1509___smf.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02630___smf
# 2: BPUM_1509___smf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1004
# Identity: 596/1004 (59.4%)
# Similarity: 596/1004 (59.4%)
# Gaps: 211/1004 (21.0%)
# Score: 1629.5
#
#
#=======================================
BSNT_02630___ 1 TTGGATCAGGCCGCTGCCTGCCTAACGATTTG-CAGAATCAATCAATTAT 49
.||...|||| || |.|||..|||.|.||.|
BPUM_1509___s 1 -----------------ATGTACAACG---TGTCCGAAAGAATGATTTTT 30
BSNT_02630___ 50 TA-----------TCCCCATC---CCTTCTATT------AAAATGGTGGA 79
.| .||.|||| ||.||| || |||||||||||
BPUM_1509___s 31 CACCGCTTAAAAGGCCTCATCTCACCCTCT-TTGTTAACAAAATGGTGGA 79
BSNT_02630___ 80 AAGCCGATCC----GTCTATGTCGCTG-------ACATCACCTGTGTTAC 118
|||.|||||| .|.|||.|...|| |||||| ||.|
BPUM_1509___s 80 AAGTCGATCCTGAGCTATATATAAATGAAGAAACACATCA------TTTC 123
BSNT_02630___ 119 AAAC-GGTTACTCG-TGAT--CAAATAAAAG----CAGCTGCATTAAAAA 160
|||| || .||| |.|| ||||.||..| ||.|.||.|.|||.|
BPUM_1509___s 124 AAACAGG---ATCGATCATTACAAACAATCGACTTCACCCGCCTAAAACA 170
BSNT_02630___ 161 -----ACGAAATAGAA-----CAATTTT------ATC---CAAAGCTCCC 191
|.||||.|||| ||.|||| ||| |||
BPUM_1509___s 171 AGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAA------- 213
BSNT_02630___ 192 GCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATTT 241
||.|||....|||||..||||.|||..||.||.||..
BPUM_1509___s 214 -------------GCCTATTTAAAGCAAAACATTCACATGATTCCCATCA 250
BSNT_02630___ 242 CTTCA---AAGCAATATCCTTTCTGGCTTAAAAGCATTTATGA---TCCC 285
|.||| |.| |||||...|...||.|||...|||||||| ||||
BPUM_1509___s 251 CATCACCCATG---TATCCCAACACACTAAAACATATTTATGATCCTCCC 297
BSNT_02630___ 286 CCTGCCGTACTGT--TTGC-AAAAGGTGATATGACTCTTCTTTCGAAAGG 332
|||| ||| ||.| ||||||..|.|| .||.|.||| |||.|
BPUM_1509___s 298 CCTG------TGTTATTCCTAAAAGGAAACAT--ATCGTATTT--AAATG 337
BSNT_02630___ 333 GAGAAAAA----TTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGG- 377
.||||||| |.||..|.|||||.|||.||..||||.|..|||||||
BPUM_1509___s 338 AAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGA 387
BSNT_02630___ 378 GAAACAAGTTGTCAATCATCTTACAAAA------GAGATCTGTCGTAAAG 421
|||.||.| |||.| |.|||| |.||.| |.||||||
BPUM_1509___s 388 GAAGCATG-TGTGA--------AGAAAATTGTTGGTGAAC--TTGTAAAG 426
BSNT_02630___ 422 G----TTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTC 467
| ||||.||||||||||.||..|.||....||.||.||.|||.|..|
BPUM_1509___s 427 GAAAATTGGATGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGC 476
BSNT_02630___ 468 CCAT-----GCTGC--AAGTATTAAGGCGAAGGGGCGGACAATTGGCGTC 510
.||| | ||| |||.|.|||.|.||| .||.|||||..|.
BPUM_1509___s 477 ACATAAAGAG-TGCATAAGAAATAAAGGGAA------AACGATTGGTATA 519
BSNT_02630___ 511 ATTGCAGGCGGATTTCAACACATTTATCCCCGA--GAAAACCTTCAGTTA 558
||.||||||||||||||.||| ||||.|||.| |||.|..|.||..|.
BPUM_1509___s 520 ATAGCAGGCGGATTTCAGCAC--TTATACCCAAAGGAACATGTGCAAATG 567
BSNT_02630___ 559 GCAGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGA 608
||.||..||||||...|.||.|||.|.||..||||.|||||.||||||.|
BPUM_1509___s 568 GCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCACCTTA 617
BSNT_02630___ 609 AACGAAACCCCAAAAATGGCATTTCCCTATGAGAAACCGTATTATCAGCG 658
....||.||..||||.||||||||.|||.||||.||.|||.|.||.||.|
BPUM_1509___s 618 TGTCAAGCCAGAAAAGTGGCATTTTCCTTTGAGGAATCGTTTAATTAGTG 667
BSNT_02630___ 659 GACT---AAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGT 705
.||| |||||.|..| ||.||..|||||.||||||||||.||||||
BPUM_1509___s 668 CACTCACAAGTGGAACC---ATCGTGATTCAGTGCAAAGAAAAGAGCGGT 714
BSNT_02630___ 706 TCGCTGATTACTGCCTATCAAGCATTGGAACAAGGGAGAGAGGTATTTGC 755
||.||.||||||||||||||||||.|.||.|||||.|.||||||||||||
BPUM_1509___s 715 TCACTCATTACTGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGC 764
BSNT_02630___ 756 CGTACCCGGTTCATTGTTTGACCCT-----TACGCCGGAGGTCCTATAAA 800
|||..|.||.|||.|.|||||.||| ||| ||||||....|.
BPUM_1509___s 765 CGTTGCAGGATCAATCTTTGATCCTAATTCTAC-----AGGTCCAGCCAG 809
BSNT_02630___ 801 ACTGATCCAGCAGGGGGCTAAAGC-----CATATGGTCAGCAGAGGATAT 845
|||.||.||||||||.||| |||| ||| |||.|..|||||||
BPUM_1509___s 810 ACTTATACAGCAGGGAGCT-AAGCTTGTTCAT----TCAACGAAGGATAT 854
BSNT_02630___ 846 TTTCGAGGAA-----CTTCCTGAGAGAAACGTTCAATATACGGAACCCTT 890
|||.|||||| ||||| |.|..|||||||||||.||||.|||
BPUM_1509___s 855 TTTAGAGGAATTCTCCTTCC-----GCAGTGTTCAATATACTGAACTCTT 899
BSNT_02630___ 891 TTGA 894
.|.|
BPUM_1509___s 900 ATAA 903
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