Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02625 and BPUM_1504

See Amino acid alignment / Visit BSNT_02625 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02625___rnhB.1.24716.seq
#    -bsequence dna-align/BPUM_1504___rnhB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02625___rnhB-BPUM_1504___rnhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02625___rnhB-BPUM_1504___rnhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02625___rnhB
# 2: BPUM_1504___rnhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 861
# Identity:     505/861 (58.7%)
# Similarity:   505/861 (58.7%)
# Gaps:         189/861 (22.0%)
# Score: 1349.0
# 
#
#=======================================

BSNT_02625___      1 ---------GTGAATACATTAACCGTAAAGGACATT------AAAGACCG     35
                              ||||| |||  ||   ||||.|| |||      ||||  |.
BPUM_1504___r      1 ATGTACACAGTGAA-ACA--AA---TAAAAGA-ATTGATAGAAAAG--CA     41

BSNT_02625___     36 TTTGCAGGAAGTGAAGGATGCA--CAAGACCCATTTATTGCCCAATGCGA     83
                     ||.|||.||  |||...||.||  ||.||.|      |||  .||    |
BPUM_1504___r     42 TTCGCAAGA--TGAGTCATACATTCATGAGC------TTG--TAA----A     77

BSNT_02625___     84 AAACGACCCGAGAAAAAGCGTTCAAACGCTTGTAGAGCAATGGCTTAAAA    133
                     |.|.|||..|||||||||.|..||||..||..|||||.|.||||      
BPUM_1504___r     78 AGATGACAAGAGAAAAAGTGCCCAAAAACTGATAGAGAAGTGGC------    121

BSNT_02625___    134 AGCAAGCGAAAGAAAA--AGCGCTGAAAGAACAATGGGTGAATATGACTT    181
                     |..|||.||.||||||  |||        ||||             ||||
BPUM_1504___r    122 ACAAAGAGAGAGAAAAGCAGC--------AACA-------------ACTT    150

BSNT_02625___    182 CCT----------ATGAAAGGCTGGCAA----GAAACA------------    205
                     |.|          ||||.|.||| ||||    .|||||            
BPUM_1504___r    151 CATGCAGCATGGCATGAGATGCT-GCAATTTGAAAACAATGCGAAGGCGC    199

BSNT_02625___    206 AGGGATTTCGCTTG-ATTGCAGGTGTTGACGAGGTCGGCCGGGGGCCATT    254
                     ||||| |.|.|.|| |||||.||..|.||.||.|..||..|.||.||..|
BPUM_1504___r    200 AGGGA-TACACATGTATTGCTGGAATAGATGAAGCAGGAAGAGGACCGCT    248

BSNT_02625___    255 GGCAGGACCAGTTGTCGCCAGC-GCAGTCATCCTTCCAGAGGAATGTGAA    303
                     ||||||.|||||||||| |||| ||.|||||..|   |.||||   .||.
BPUM_1504___r    249 GGCAGGCCCAGTTGTCG-CAGCAGCTGTCATATT---AAAGGA---CGAT    291

BSNT_02625___    304 A------TACTTGGGCTGACAGACTCCAAAAAGCTTTCAGAGAAAAAACG    347
                     |      |.||.||..|.|..|||||.|||.|..|.||.|||||||||.|
BPUM_1504___r    292 ACAGTCCTGCTCGGTTTAAACGACTCAAAACAATTATCTGAGAAAAAAAG    341

BSNT_02625___    348 CGAGGAATATTACGAGCTT-ATTATGAAGGAAGCACTGGCGGTCGGGATA    396
                     ...||.||||||.|| ||| |||..|||.||||||||.|...||||.||.
BPUM_1504___r    342 ATTGGCATATTATGA-CTTGATTCAGAAAGAAGCACTTGATATCGGAATC    390

BSNT_02625___    397 GGAATTGTAGAAGCTACTGTGATTGATGAGATCAATATATATGAAGCTTC    446
                     ||.|||||.||.||..||..|||||||||.||||||||.||.||.||.||
BPUM_1504___r    391 GGCATTGTTGATGCGGCTACGATTGATGAAATCAATATTTACGAGGCATC    440

BSNT_02625___    447 AAAAATGGCAATGGTGAAAGCGATACAAG-------ATTTG-TCGGGTAC    488
                     ||.|.||||.|||||||.|||      ||       |||.| ||  .|||
BPUM_1504___r    441 AAGACTGGCGATGGTGAGAGC------AGTGGAGCAATTAGCTC--ATAC    482

BSNT_02625___    489 ACCTGATTATTTGCTTGTTGACGCAATGACACTTCC----CCTCGACACG    534
                     ||||||||||.|.||..|.||.||.|||||.||.||    |||...||| 
BPUM_1504___r    483 ACCTGATTATCTACTCATAGATGCCATGACGCTCCCGCTTCCTATTCAC-    531

BSNT_02625___    535 GCTCAGGCGTCAATTATAAAAGGCGATGCCAAAAGCGTGTCTATTGCGGC    584
                        ||||.|...||.||.|||||.||.||.|||||.|..|||||.||.||
BPUM_1504___r    532 ---CAGGAGAATATCATCAAAGGAGACGCAAAAAGTGCATCTATCGCAGC    578

BSNT_02625___    585 AGGTGCGTGTATCGCAAAAGTGACGAGGGACCGAATGATGAGCGCTTATG    634
                     ||||||.|||||.|||||.|||||.||.||.|..||||||         |
BPUM_1504___r    579 AGGTGCATGTATTGCAAAGGTGACAAGAGATCAGATGATG---------G    619

BSNT_02625___    635 CCGAA-AC--------GTATCCCATGTACGGCTTTGAAAAAAATAAAGGC    675
                     ..||| ||        |||.||...|||....|||||||||.|||||||.
BPUM_1504___r    620 AAGAATACGGGCGTCAGTACCCTGAGTATCAATTTGAAAAACATAAAGGG    669

BSNT_02625___    676 TATGGGACAAAAGAACATTTGGAAGCTC--TC-----------GCTGCAT    712
                     ||.||.||||||||.|||.|||..|| |  ||           |||||  
BPUM_1504___r    670 TACGGAACAAAAGAGCATCTGGCTGC-CATTCAAACACATGGAGCTGC--    716

BSNT_02625___    713 ACGGCCCAACTGAATTGCACCGCAAAACTTTCGCTCCTGTTCAATC----    758
                         |||||      |.||.||...|.|.||.||.||.||..||||    
BPUM_1504___r    717 ----CCCAA------TCCATCGATTATCATTTGCGCCGGTGAAATCCGTT    756

BSNT_02625___    759 -TTTCAGATAA    768
                      |.||  ||||
BPUM_1504___r    757 ATATC--ATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02625 and BPUM_1504

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
