Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02623 and BPUM_1503

See Amino acid alignment / Visit BSNT_02623 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02623___rbgA.1.24716.seq
#    -bsequence dna-align/BPUM_1503___rbgA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02623___rbgA-BPUM_1503___rbgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02623___rbgA-BPUM_1503___rbgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02623___rbgA
# 2: BPUM_1503___rbgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity:     639/854 (74.8%)
# Similarity:   639/854 (74.8%)
# Gaps:          10/854 ( 1.2%)
# Score: 2363.0
# 
#
#=======================================

BSNT_02623___      1 ATGACAATTCAATGGTTCCCGGGCCATATGGCAAAAGCAAGAAGGGAAGT     50
                     |||||.|||||||||||.||.|||||||||||||||||||||.|.|||||
BPUM_1503___r      1 ATGACGATTCAATGGTTTCCAGGCCATATGGCAAAAGCAAGACGTGAAGT     50

BSNT_02623___     51 AACCGAAAAATTAAAATTAATCGATATCGTATATGAATTGGTAGATGCCA    100
                     .||.|||||||||||..|.|||||.|||||||.||||||....|||||.|
BPUM_1503___r     51 CACAGAAAAATTAAAGCTCATCGACATCGTATTTGAATTAACCGATGCTA    100

BSNT_02623___    101 GAATTCCAATGTCATCAAGAAACCCAATGATTGAAGATATTCTAAAAAAC    150
                     |||||||.|||||.||.||||||||||||||.|||||.||.||..|.|||
BPUM_1503___r    101 GAATTCCGATGTCCTCTAGAAACCCAATGATCGAAGAAATCCTTCAGAAC    150

BSNT_02623___    151 AAGCCGCGAATTATGCTGTTAAACAAGGCTGACAAAGCAGATGCGGCAGT    200
                     ||.||...|||.|||||.||||||||.||.||.|||||.|||.|....||
BPUM_1503___r    151 AAACCCAAAATCATGCTATTAAACAAAGCGGATAAAGCGGATCCTCGTGT    200

BSNT_02623___    201 TACACAGCGGTGGAAAGAGCACTTTGAGAAGCAGGGGATCCGCTCTCTGT    250
                     .|||.||..||||.|.|.||||||||||.||||.||..|.||.||.||..
BPUM_1503___r    201 GACAAAGGAGTGGCAGGCGCACTTTGAGCAGCAAGGCGTTCGGTCACTTG    250

BSNT_02623___    251 CTATTAATTCTGTAAATGGACAAGGGTTAAATCAAATTGTGCCTGCATCA    300
                     |||||||.|||||..||||||||||||||||.||.||..|..|..|.|||
BPUM_1503___r    251 CTATTAACTCTGTCGATGGACAAGGGTTAAACCAGATCATCACAACTTCA    300

BSNT_02623___    301 AAAGAGATCCTCCAAGAAAAATTTGACCGGATGCGTGCGAAAGGTGTGAA    350
                     |||||.|||.|..||||||||||.|||||.|||...||.||||||||.||
BPUM_1503___r    301 AAAGAAATCTTAAAAGAAAAATTCGACCGCATGAAAGCCAAAGGTGTCAA    350

BSNT_02623___    351 GCCGAGAGCGATTCGCGCTTTGATTATCGGCATTCCAAACGTCGGAAAAT    400
                     .||..|.||.|||||.||..||||||||||.|||||.||.|||||.||||
BPUM_1503___r    351 ACCACGTGCAATTCGGGCGCTGATTATCGGAATTCCCAATGTCGGGAAAT    400

BSNT_02623___    401 CAACGCTCATCAACCGGCTTGCAAAGAAAAACATAGCAAAAACGGGAGAC    450
                     |.||..|.|||||.||..|.||.||.||.|||||.||.|||||.||||||
BPUM_1503___r    401 CGACCTTAATCAATCGTTTAGCGAAAAAGAACATTGCCAAAACAGGAGAC    450

BSNT_02623___    451 AGACCTGGTATTACGACCTCTCAACAGTGGGTCAAAGTTGGGAAAGAATT    500
                     .|.|||||||||||.|||||.||.||.|||||.||.||.|||||||||.|
BPUM_1503___r    451 CGTCCTGGTATTACCACCTCACAGCAATGGGTGAAGGTAGGGAAAGAAAT    500

BSNT_02623___    501 AGAGCTATTAGATACACCGGGAATTTTGTGGCCTAAATTTGAGGATGAGC    550
                     .||.||..|.||||||||.|||||..|.|||||.||.|||||.||||||.
BPUM_1503___r    501 GGAACTGCTCGATACACCTGGAATCCTCTGGCCGAAGTTTGAAGATGAGA    550

BSNT_02623___    551 TTGTCGGTTTGAGACTGGCAGTCACCGGGGCTATTAAAGACTCGATTATT    600
                     ..||.||..|.||.||.|||||.||.||.||.||.|||||.||.||.|||
BPUM_1503___r    551 AAGTAGGGCTCAGGCTAGCAGTAACTGGAGCGATCAAAGATTCTATCATT    600

BSNT_02623___    601 AATTTGCAGGACGTGGCCGTGTTTGGTCTTCGTTTTCTCGAAGAACATTA    650
                     ||.||.|||||.||.||.||||.|||.|||||.|||||.||||||.|.||
BPUM_1503___r    601 AACTTACAGGATGTCGCTGTGTATGGACTTCGCTTTCTAGAAGAAAACTA    650

BSNT_02623___    651 CCCAGAACGGCTTAAAGAGCGTTATGGCCTTGATGAGATCCCAGAGGACA    700
                     .|||||..|..|.|||.||||.||||.|||....||.||.||.||.||.|
BPUM_1503___r    651 TCCAGAGAGATTAAAAAAGCGCTATGACCTAACAGACATTCCTGAAGATA    700

BSNT_02623___    701 TTGCCGAGCTGTTTGATGCAATAGGTGAAAAGCGGGGCTGTCTCATGAGC    750
                     ..||.|||||||||||||||||||||..||||||.|||||||||||||||
BPUM_1503___r    701 CGGCTGAGCTGTTTGATGCAATAGGTACAAAGCGCGGCTGTCTCATGAGC    750

BSNT_02623___    751 GGTGGGCTCATCAACTACGATAAGACGACTGAAGTCATCATTCGCGATAT    800
                     |||||..|.||.||.|||||.||.||.||.|||.||||.|||||.|||||
BPUM_1503___r    751 GGTGGATTTATTAATTACGACAAAACCACCGAAATCATTATTCGGGATAT    800

BSNT_02623___    801 TCGCACTGAAAAGTTCGGCAGGCTGTCATTTGAACAGCCGACGATGTAA-    849
                     |||.||||||||.||.||....||..|.|||||..||||     ||.|| 
BPUM_1503___r    801 TCGAACTGAAAAATTTGGTCCCCTCACTTTTGAGAAGCC-----TGAAAG    845

BSNT_02623___    849 ----    849
                         
BPUM_1503___r    846 CTAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02623 and BPUM_1503

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
