Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02620 and BPUM_1502

See Amino acid alignment / Visit BSNT_02620 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02620___rplS.1.24716.seq
#    -bsequence dna-align/BPUM_1502___rplS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02620___rplS-BPUM_1502___rplS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02620___rplS-BPUM_1502___rplS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02620___rplS
# 2: BPUM_1502___rplS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 348
# Identity:     320/348 (92.0%)
# Similarity:   320/348 (92.0%)
# Gaps:           0/348 ( 0.0%)
# Score: 1488.0
# 
#
#=======================================

BSNT_02620___      1 ATGCAAAAACTAATTGAAGATATCACAAAAGAACAGCTTCGTACTGATCT     50
                     ||||||.||.|.||||||||.||.|||||||||||..|.||.||||||||
BPUM_1502___r      1 ATGCAACAATTGATTGAAGAAATTACAAAAGAACAATTACGCACTGATCT     50

BSNT_02620___     51 TCCTGCGTTCCGTCCTGGTGACACTTTACGTGTACACGTTAAAGTTGTTG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||.|
BPUM_1502___r     51 TCCTGCGTTCCGTCCTGGTGACACTTTACGTGTACACGTTAAAGTTGTCG    100

BSNT_02620___    101 AGGGTAACCGTGAGCGTATCCAGATCTTTGAAGGTGTTGTGATTAAGCGT    150
                     ||||||..||||||||||||||||||||||||||||||||.|||||||||
BPUM_1502___r    101 AGGGTACTCGTGAGCGTATCCAGATCTTTGAAGGTGTTGTAATTAAGCGT    150

BSNT_02620___    151 CGTGGTGGTGGAATCAGCGAAACGTTCACAGTTCGTAAGATTTCTTACGG    200
                     |||||||||||||||||||||||.||||||||||||||||||||||||||
BPUM_1502___r    151 CGTGGTGGTGGAATCAGCGAAACTTTCACAGTTCGTAAGATTTCTTACGG    200

BSNT_02620___    201 TGTTGGCGTTGAACGTACTTTCCCAGTACACACACCAAAAATCGCGAAAA    250
                     |||.||||||||.|||||.|||||.||||||||||||||||||||.||.|
BPUM_1502___r    201 TGTAGGCGTTGAGCGTACATTCCCTGTACACACACCAAAAATCGCTAACA    250

BSNT_02620___    251 TCGAAGTTGTACGTTACGGTAAAGTACGCCGTGCTAAACTTTACTACCTG    300
                     ||||||||||||||.|||||||.|||||.|||||.||||||||||||||.
BPUM_1502___r    251 TCGAAGTTGTACGTCACGGTAAGGTACGTCGTGCGAAACTTTACTACCTA    300

BSNT_02620___    301 CGTGAACTTCGCGGAAAAGCGGCTCGTATTAAAGAGATCAGACGATAA    348
                     ||||||||||||||.||||||||||||||.|||||.||||||||||||
BPUM_1502___r    301 CGTGAACTTCGCGGTAAAGCGGCTCGTATCAAAGAAATCAGACGATAA    348


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