Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02619 and BPUM_1501
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_02619___trmD.1.24716.seq
# -bsequence dna-align/BPUM_1501___trmD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02619___trmD-BPUM_1501___trmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02619___trmD-BPUM_1501___trmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02619___trmD
# 2: BPUM_1501___trmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 759
# Identity: 553/759 (72.9%)
# Similarity: 553/759 (72.9%)
# Gaps: 51/759 ( 6.7%)
# Score: 1901.0
#
#
#=======================================
BSNT_02619___ 1 ATGAAAATCGACTTTTTGACGCTGTTTCCCGAAATGTTTGAAGGCGTGCT 50
||||||||||||||.||.||.||.|||||.||||||||.|||||.|||||
BPUM_1501___t 1 ATGAAAATCGACTTCTTAACACTTTTTCCTGAAATGTTCGAAGGTGTGCT 50
BSNT_02619___ 51 CGGCTCATCAATTCTTCAAAAA-GCCCAGGAAAAAGATGCGGTG-CAGTT 98
|..||||||.| ||||.||||| ||.|||||.|||||.||.||| || |
BPUM_1501___t 51 CCACTCATCGA-TCTTAAAAAAGGCACAGGAGAAAGAAGCTGTGTCA--T 97
BSNT_02619___ 99 TCAA-GTCGTAAATTTCCGGGAGTACTCTGATAACAAGCACAATACTGTT 147
|||| ||.||.|||||..|.|||||.||.|||.|.|||||.||.||.||.
BPUM_1501___t 98 TCAATGTTGTCAATTTTAGAGAGTATTCGGATCATAAGCATAAAACAGTA 147
BSNT_02619___ 148 GATGATTATCCTTATGGCGGCGGGGCAGGCATGGTTCTCAAGCCTCAGCC 197
|||||.|||||.|||||||||||.||.||.|||||.||.||..|||||||
BPUM_1501___t 148 GATGACTATCCGTATGGCGGCGGTGCTGGTATGGTACTGAAAGCTCAGCC 197
BSNT_02619___ 198 TGTTTTTGACGCGGTCGAGGACCTGAC-ATCAAAGGCAGC-CGCTGCTCC 245
.||.||.||.|||||.||.||..|||| |.|||||..||| .|..| ||
BPUM_1501___t 198 CGTATTCGATGCGGTAGAAGATTTGACGAACAAAGCAAGCAAGAAG--CC 245
BSNT_02619___ 246 GCGTATTATCCTCGTATGCCCGCAAGGTGAGCGTTTTACCCAAAAAAAAG 295
.||.|||||.||.||.||.||.|||||.||..|.|.|||.|||||.||.|
BPUM_1501___t 246 CCGAATTATTCTTGTCTGTCCTCAAGGAGAAAGATATACACAAAAGAAGG 295
BSNT_02619___ 296 CCGAGCAATTAGCAAAGGAAGAGCATTTGCTGTTCATTTGCGGCCACTAT 345
|.|||.||.|.|||||.|||||.||..|..||||||||||||||||.|||
BPUM_1501___t 296 CAGAGGAACTTGCAAAAGAAGAACACCTTATGTTCATTTGCGGCCATTAT 345
BSNT_02619___ 346 GAAGGCTATGATGAACGCATTCGCGAGCA-CTTGGTAACGGATGAAATAT 394
||||||||.|||||.|||||..|.||||| ||| ||.||.||||||||.|
BPUM_1501___t 346 GAAGGCTACGATGAGCGCATCAGGGAGCATCTT-GTCACAGATGAAATCT 394
BSNT_02619___ 395 CAATTGGCGATTTTGTTCTGACGGGCGGTGAGCTCCCTGCAATGATGATC 444
||||.||.|||||.|||||.||.|||||.|||||.||.||.||||||||.
BPUM_1501___t 395 CAATCGGAGATTTCGTTCTCACAGGCGGAGAGCTGCCAGCGATGATGATT 444
BSNT_02619___ 445 GCAGACAGTGTGGTCAGACTGCTTCCGGGTGTACTGGGTAAAGAGGCTTC 494
|||||||||||||||||.||..|.||...|||.||.||.|||||.||.||
BPUM_1501___t 445 GCAGACAGTGTGGTCAGGCTTTTGCCTCATGTGCTTGGAAAAGAAGCGTC 494
BSNT_02619___ 495 CCATATTGAGGATTCCTTCAGCACCGGACTTT--TAGAGCACCCGCATTA 542
.||.|||||.|||||.||.||.||.|| ||| |||||||.||.||.||
BPUM_1501___t 495 TCACATTGAAGATTCATTTAGTACAGG--TTTGCTAGAGCATCCTCACTA 542
BSNT_02619___ 543 TACAAGACCGGCAGATTACAAAGGTTTAAAAGTGCCTGAAACACTCTTGT 592
||||||.||.||.|||||.|||||..||||||||||.||....|||.|.|
BPUM_1501___t 543 TACAAGGCCAGCCGATTATAAAGGACTAAAAGTGCCGGATGTGCTCCTTT 592
BSNT_02619___ 593 CAGGAAACCATGCAAAAATTGAAGAATGGCGGAATAAAGAATCGATCAGA 642
|.|||||.|||||.|||||.|||||.||||||...|||||||| |..||
BPUM_1501___t 593 CTGGAAATCATGCCAAAATAGAAGAGTGGCGGCGCAAAGAATC--TTTGA 640
BSNT_02619___ 643 AG-GACC---TACCTAAGACGTCCGGATCTG--------TTGAAAGACTA 680
|| ||.| ||| ||||||.||.|||.|| |||.||.|
BPUM_1501___t 641 AGCGAACTTATAC--AAGACGGCCAGATTTGATCGATTCTTGCAAAA--- 685
BSNT_02619___ 681 CCCGCTTACAGAGCAGCA-AAGAAAG-TGGATTT-----CTGAATGGGAA 723
||.|.||||| ||.| ||.|||| |||.||| ||..||
BPUM_1501___t 686 --CGTTAACAGA--AGAAGAAAAAAGATGGCTTTGGCAGCTTCAT----- 726
BSNT_02619___ 724 AAAGAATAG 732
||.||.|||
BPUM_1501___t 727 AATGACTAG 735
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