Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02608 and BPUM_1492

See Amino acid alignment / Visit BSNT_02608 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_02608___rnc.1.24716.seq
#    -bsequence dna-align/BPUM_1492___rnc.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02608___rnc-BPUM_1492___rnc.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02608___rnc-BPUM_1492___rnc.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02608___rnc
# 2: BPUM_1492___rnc
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 758
# Identity:     584/758 (77.0%)
# Similarity:   584/758 (77.0%)
# Gaps:          22/758 ( 2.9%)
# Score: 2196.5
# 
#
#=======================================

BSNT_02608___      1 ATGTCAAAACACTCACATTATAAAGATAAA---AAAAAGTTCTATAAAAA     47
                     |||.||||      |||.||||||||.|||   |||.||..|   |||||
BPUM_1492___r      1 ATGCCAAA------ACAATATAAAGACAAACAGAAACAGAGC---AAAAA     41

BSNT_02608___     48 AGTAGAACAATTTAAAGAGTTTCAAGAACGGATTTCGGTTCACTTTCAAA     97
                     |.||||.|||||||.|||.||.||..|.||.|||||.||.||||||||||
BPUM_1492___r     42 ACTAGAGCAATTTAGAGAATTCCAGCAGCGTATTTCTGTACACTTTCAAA     91

BSNT_02608___     98 ATGAAAAGCTTTTGTATCAAGCATTTACACATTCATCTTATGTGAATGAG    147
                     |||||||.|||.|.||||||||||||||.|||||.||||||||||||||.
BPUM_1492___r     92 ATGAAAAACTTCTATATCAAGCATTTACGCATTCCTCTTATGTGAATGAA    141

BSNT_02608___    148 CATCGGAAAAAGCCGTATGAAGATAATGAAAGGCTTGAATTTTTAGGTGA    197
                     ||.||||||||.||.||.||.|||||||||||.||||||||||||||.||
BPUM_1492___r    142 CACCGGAAAAAACCATACGAGGATAATGAAAGACTTGAATTTTTAGGAGA    191

BSNT_02608___    198 CGCTGTTTTGGAACTGACGATCTC-CAGATTCTTATTTGCCAAATACCCG    246
                     .||||||||.|||.||||.||||| || ||||||||||||.||||||||.
BPUM_1492___r    192 TGCTGTTTTAGAATTGACCATCTCTCA-ATTCTTATTTGCGAAATACCCT    240

BSNT_02608___    247 GCTATGAGTGAAGGAGATTTGACGAAATTGAGAGCCGCAATTGTTTGCGA    296
                     ||.|||||.||.||||||||.||.|||.|.|||||.||.||.||.||.||
BPUM_1492___r    241 GCGATGAGCGAGGGAGATTTAACAAAACTAAGAGCAGCGATCGTATGTGA    290

BSNT_02608___    297 ACCGTCTCTCGTTTCATTGGCTCACGAGCTGTCATTCGGCGATCTTGTCC    346
                     |||.||.||.||.||..||||.||.||||||||.|||||.||.|||||.|
BPUM_1492___r    291 ACCATCACTTGTGTCTCTGGCACATGAGCTGTCCTTCGGAGACCTTGTTC    340

BSNT_02608___    347 TGTTGGGTAAAGGCGAGGAAATGACAGGCGGAAGAAAGCGTCCTGCTCTA    396
                     |.||.||.||||||||.||||||||.|||||.|||||.|||||.||.||.
BPUM_1492___r    341 TTTTAGGAAAAGGCGAAGAAATGACCGGCGGTAGAAAACGTCCAGCACTT    390

BSNT_02608___    397 TTGGCGGATGTTTTTGAGGCATTTATCGGAGC-CTTGTACCTTGACCAAG    445
                     ||.||.||.||.||.|||||.||||||||||| ||| ||..|.||.||||
BPUM_1492___r    391 TTAGCAGACGTATTCGAGGCGTTTATCGGAGCACTT-TATTTAGATCAAG    439

BSNT_02608___    446 GATTAGAGCCGGTCGAAAGTTTCTTAAAAGTTTATGTGTTCCCTAAAATT    495
                     |..|.|||||.||.|||.|.|||.||.|||..|||||.|..||.||||||
BPUM_1492___r    440 GGCTGGAGCCAGTAGAACGATTCCTAGAAGCCTATGTTTATCCGAAAATT    489

BSNT_02608___    496 AACGATGGTGCTTTTTCTCATGTGATGGATTTCAAAAGCCAGCTGCAGGA    545
                     ||.|||||.||.||.||.|||||.|||||.||.||||||||||||||.||
BPUM_1492___r    490 AATGATGGAGCGTTCTCGCATGTCATGGACTTTAAAAGCCAGCTGCAAGA    539

BSNT_02608___    546 ATACGTGCAGCGGGACGGCAAAGGCTCT-CTGGAGTATAAAATCTCCAAC    594
                     ||.|||.|||||.||.||.||||| |.| ||.||.||....||.|...|.
BPUM_1492___r    540 ATTCGTTCAGCGCGATGGAAAAGG-TGTACTCGAATACCGCATTTTGCAT    588

BSNT_02608___    595 GAAAAAGGACCTGCGCACAACCGTGAATTTGAAGCCATCGTATCTCTAAA    644
                     |||||||||||.||.||||||||||||||||||||.|..||.||.||...
BPUM_1492___r    589 GAAAAAGGACCAGCACACAACCGTGAATTTGAAGCAAATGTCTCCCTTCG    638

BSNT_02608___    645 AGGTGAACCACTCGGAGTCGGAAACGGCCGTTCA--AAGAAAGAAGCCGA    692
                     .||.|||...||.|||.|.|||||.||.||  ||  ||.||||||||.||
BPUM_1492___r    639 CGGGGAAGTGCTTGGAATTGGAAATGGTCG--CAGTAAAAAAGAAGCAGA    686

BSNT_02608___    693 ACAGCACGCTGCTCAGGAAGCTTTAGCTAAATTGCAAAAACACCATACGA    742
                     ||||||.|||||.||||||||..|.|||||||||||.|||||.||||.||
BPUM_1492___r    687 ACAGCATGCTGCACAGGAAGCACTTGCTAAATTGCAGAAACATCATATGA    736

BSNT_02608___    743 AACAATAA    750
                     |.||||||
BPUM_1492___r    737 ACCAATAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02608 and BPUM_1492

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
