Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02605 and BPUM_1489

See Amino acid alignment / Visit BSNT_02605 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:10
# Commandline: needle
#    -asequence dna-align/BSNT_02605___fabD.1.24716.seq
#    -bsequence dna-align/BPUM_1489___fabD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02605___fabD-BPUM_1489___fabD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02605___fabD-BPUM_1489___fabD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02605___fabD
# 2: BPUM_1489___fabD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity:     674/1013 (66.5%)
# Similarity:   674/1013 (66.5%)
# Gaps:         127/1013 (12.5%)
# Score: 2183.0
# 
#
#=======================================

BSNT_02605___      1 ATGAGTAAGATTGCATTTTTATTCCCGGGTCAGGGATCACAATTTATCGG     50
                     ||||.|||.|||||||||||||||||.||.||.||.||.|||...||.||
BPUM_1489___f      1 ATGACTAAAATTGCATTTTTATTCCCTGGCCAAGGCTCTCAAAAAATTGG     50

BSNT_02605___     51 CATGGGAAAAGAGCTTTAT---------GAGCAGGTGCCTGCTGCAAAGC     91
                     ||||||.|||||  |||||         .|||| ||..||     |||||
BPUM_1489___f     51 CATGGGGAAAGA--TTTATTTGACCAAGAAGCA-GTATCT-----AAAGC     92

BSNT_02605___     92 GTCTGTTTGATGAAGCCGATGAAAC------GTTAGAAACAAAGCTCAGC    135
                      |.|.|||||.|||||.||..|.||      .||.||       ||.|.|
BPUM_1489___f     93 -TGTATTTGAAGAAGCAGACAAGACCCTCGGTTTTGA-------CTTATC    134

BSNT_02605___    136 -TCGCTTATTTTTGAGGGGGCTGCTGAAGAATTAACACTTACATACAATG    184
                      ||..|.||||||||.||.|..||.||||||.|.||.||.||.||.||.|
BPUM_1489___f    135 TTCAATGATTTTTGAAGGAGAGGCAGAAGAACTGACGCTCACTTATAACG    184

BSNT_02605___    185 CGCAGCCTGCTTTGCTTACGACAAGCATCGCTGTTCTT-GAGAAATTTAA    233
                     |||||||.|||.|..|.||.|||||.||||| ..|||| .||||||||.|
BPUM_1489___f    185 CGCAGCCAGCTCTTTTAACAACAAGTATCGC-CATCTTAAAGAAATTTGA    233

BSNT_02605___    234 AGA-ATCTGGCATTACACCTGATTTCACAGCAGGACACAGCCTTGGTGAA    282
                     ||| |.| ||.||.|.|.|.||||.|.||||||||||.||||||||.|||
BPUM_1489___f    234 AGAGAGC-GGAATCAAAGCAGATTACGCAGCAGGACATAGCCTTGGGGAA    282

BSNT_02605___    283 TATTCTGCACTGGTTGCGGCTGGCGCTCTGTC-TTTCAAAGATGCTGTTT    331
                     |||.|.||.||.|||||.||.|||||.||.|| |||| ||||||||||||
BPUM_1489___f    283 TATACGGCCCTTGTTGCAGCAGGCGCACTATCGTTTC-AAGATGCTGTTT    331

BSNT_02605___    332 ATACCGTCAGAAAACGCGGAGAGTTTATGAATGAAGCGGTACCGGCTGGC    381
                     ||.|.||.||.||.|||||.||.||.|||||.|||||.||.||.||.||.
BPUM_1489___f    332 ATGCAGTGAGCAAGCGCGGCGAATTAATGAACGAAGCTGTTCCAGCAGGA    381

BSNT_02605___    382 GAAGGAGCAATGGCTGCGATTCTCGGCATGGATGCTGAAGCA----TTAA    427
                     ||.||.||.|||||.||||||||.|||.|.||   |.||.||    ||..
BPUM_1489___f    382 GAGGGCGCTATGGCAGCGATTCTTGGCTTAGA---TCAAACAGCGCTTTT    428

BSNT_02605___    428 AGCAAGTAACCGATAAAGTCACAGAGGAAGGCAACCTTGTACAGCTTGCG    477
                     || ||||.||..|..||||.||||||...||..|.||||||.|.||.||.
BPUM_1489___f    429 AG-AAGTGACAAAAGAAGTGACAGAGAGTGGTCATCTTGTAGAACTCGCT    477

BSNT_02605___    478 AATCTCAACTGTCCTGGCCAAATCGTCATTTCCGGAACAGCTAAAGGGGT    527
                     ||..|.|||||||||||.|||||.||.||.||.||.|||||.|||||.||
BPUM_1489___f    478 AACTTAAACTGTCCTGGTCAAATTGTAATCTCTGGTACAGCAAAAGGTGT    527

BSNT_02605___    528 TGAGCTTGCATCTGAACTGGCAAAAGAGAACGGCGCAAAACGCGCAATTC    577
                     .||.||.||.||.|||...||.|||||.||.|||||||||||.||.|||.
BPUM_1489___f    528 CGAACTCGCTTCAGAAAAAGCGAAAGAAAAGGGCGCAAAACGTGCGATTG    577

BSNT_02605___    578 CGCTTGAAGTAAGCGGTCCGTTCCATTCTGAACTGATGAAACCGGCTGCT    627
                     |.||||||||.||.||.||.||||||||||...|.||||||||.||.|||
BPUM_1489___f    578 CCCTTGAAGTGAGTGGACCTTTCCATTCTGCCTTAATGAAACCAGCCGCT    627

BSNT_02605___    628 GAAAAGCTGAAAGAGGTATTG------------------GACGCCTGTGA    659
                     |||||..|.|.|||.||.|||                  ||.|||     
BPUM_1489___f    628 GAAAAATTCACAGATGTTTTGTCAAAACTAGATATTTCAGATGCC-----    672

BSNT_02605___    660 CATAAAAGACGCTGACATTCCGGTCATCTCAAATGTTTCTGCTGA-----    704
                        ||||.|          ||.||.|||||||||||..|.||.||     
BPUM_1489___f    673 ---AAAACA----------CCAGTGATCTCAAATGTCACAGCAGACATCG    709

BSNT_02605___    705 --------CGTGATG--ACTGAAAAAGCAGATATCAAAGAAAAACTTATT    744
                             |||||||  |.|||||          |||||     ||.|||
BPUM_1489___f    710 TCACATCTCGTGATGCTATTGAAA----------CAAAG-----CTCATT    744

BSNT_02605___    745 GAGCAGCTTTACTCTCCGGTTCGTTTTGAGGAAAGCATTAACAA--GCTG    792
                     ||.||..|.||.|||||.|||||.|||||.||||||.|  |.||  .|||
BPUM_1489___f    745 GAACAATTGTATTCTCCTGTTCGATTTGAAGAAAGCGT--AGAACGTCTG    792

BSNT_02605___    793 ATCGCAGAGGGTGTTACGACTTTTATTGAAATCGGTCCCGGAAAAGTGCT    842
                     ||.|.....||.||.||.||.|||||||||||.|||||.||.||||||||
BPUM_1489___f    793 ATTGATTTAGGCGTAACAACGTTTATTGAAATTGGTCCGGGCAAAGTGCT    842

BSNT_02605___    843 TTCAGGCCTTGTGAAAAAAGTAAATAGACGGTTAAAAACAATTGCTGTAT    892
                     ||||||.|||||||||||.||.|||.|.||..|.|.|||.|||.|.||.|
BPUM_1489___f    843 TTCAGGTCTTGTGAAAAAGGTCAATCGCCGCCTGACAACCATTTCAGTTT    892

BSNT_02605___    893 CAGATCCGGAAACGATCG-AGCTGGCAATTCAAACGCTTAAGGAGGAGAA    941
                     ||||||.||||||.||.| ||| .||.|||.||||..|.||||.||    
BPUM_1489___f    893 CAGATCAGGAAACAATTGAAGC-AGCCATTGAAACATTGAAGGGGG----    937

BSNT_02605___    942 TGATAATGCTTAA    954
                          ||.|||.|
BPUM_1489___f    938 -----ATTCTTGA    945


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