Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02598 and BPUM_1483
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_02598___yloV.1.24716.seq
# -bsequence dna-align/BPUM_1483.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02598___yloV-BPUM_1483.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02598___yloV-BPUM_1483.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02598___yloV
# 2: BPUM_1483
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1755
# Identity: 1198/1755 (68.3%)
# Similarity: 1198/1755 (68.3%)
# Gaps: 168/1755 ( 9.6%)
# Score: 3789.5
#
#
#=======================================
BSNT_02598___ 1 TTGTCTATCAGAACAT-TAAACGGCAGAACCTTTGCCGAGATGATTCTTG 49
||||||||.|||| || |..|.|||.|..|.|||||..|.||||||||||
BPUM_1483 1 TTGTCTATTAGAA-ATCTTGATGGCCGCTCATTTGCAAAAATGATTCTTG 49
BSNT_02598___ 50 CGGGAGCGCAGAATCTGTCTCAAAACGC-CA----GTGCAGTTGATGCAC 94
|.||.||.||..||||.||||||||||| || ||| |||||..
BPUM_1483 50 CAGGTGCTCACCATCTTTCTCAAAACGCACAAATTGTG-----GATGCGT 94
BSNT_02598___ 95 TGAACGTGTTTCCGGTGCCGGACGGTGATACGGGAACAAATATGAACCTG 144
|.||.||.|||||.|||||.|||||.||.|||||.|||||||||||..||
BPUM_1483 95 TAAATGTTTTTCCAGTGCCAGACGGAGACACGGGGACAAATATGAATTTG 144
BSNT_02598___ 145 TCGATGACTTCCGGAGCAAGAGAAGTTGAACAAATGGATACGGATGATAT 194
||.||||||||.||.||||.||.|||||||.|||...||||.|||.||||
BPUM_1483 145 TCAATGACTTCAGGGGCAAAAGCAGTTGAAGAAACAAATACCGATCATAT 194
BSNT_02598___ 195 CGGGAAGGTGGGTTCCGCGTTATCTAAAGGGCTGCTCATGGGAGCACGCG 244
.||||||||.||....||.||.||.||||||||..|.|||||.|||.|.|
BPUM_1483 195 TGGGAAGGTCGGCGTGGCCTTGTCAAAAGGGCTATTAATGGGCGCAAGAG 244
BSNT_02598___ 245 GAAATTCAGGAGTTATCCTATCCCAATTGTTCCGCGGATTTAGCAAAAGC 294
|.||.|||||.|||||||||||.||..|.||..|.||.||.||.||| |
BPUM_1483 245 GGAACTCAGGCGTTATCCTATCACAGCTCTTTAGAGGTTTCAGTAAA--C 292
BSNT_02598___ 295 ATTGAAACGA--AAAAAGAA---ATTAATGCACTTGAGTTTGCCGCTGCG 339
| ||.||| |||||||| |||.|||||...||.||||||..|||.
BPUM_1483 293 A---AATCGAACAAAAAGAAATGATTGATGCAAAAGAATTTGCCCTTGCC 339
BSNT_02598___ 340 CTGCAAGCAGGTGTAGACATGGCGTATAAAGCTGTCATGAAACCTGTAGA 389
.|.||.||||||||.||.|..||.||||||||.||.|||||.||..|.||
BPUM_1483 340 TTACAGGCAGGTGTCGATACAGCATATAAAGCCGTGATGAAGCCGATTGA 389
BSNT_02598___ 390 GGGCACCATTTTAACAGTTGCAAAAGACGCTGCAAAAAAAGC-GATGATC 438
.||.|||||.|||||.||.|||||.||.||.|||||.||||| |.||.|.
BPUM_1483 390 AGGAACCATCTTAACGGTCGCAAAGGATGCAGCAAAGAAAGCGGTTGCTG 439
BSNT_02598___ 439 TT--AGCA---GAAAAAGAAACCGATATCACTGCGCTGATGA-TTGCAGT 482
|| |||| |||||.||.| .|.||.|||.|..||| || |..
BPUM_1483 440 TTTCAGCAACCGAAAATGACA-----TTGACCGCGTTCTTGAGTT--AAC 482
BSNT_02598___ 483 GACAGAAGAAGCAGAG-GCGTCTTTAAACCGCACCCCTGAATTGCTACCT 531
||..||.||||| ||| ||.||..|..|.||.||.||.||..||||.|||
BPUM_1483 483 GATTGAGGAAGC-GAGAGCATCACTTGATCGAACGCCAGATCTGCTTCCT 531
BSNT_02598___ 532 GTCCTAAAGGAAGTAGGAGTTGTCGATAGCGGGGGCAAAGGCCTGCTCTG 581
||..||||.||||||||.|||||||||||.||.||.|||||.||.|||||
BPUM_1483 532 GTTTTAAAAGAAGTAGGCGTTGTCGATAGTGGAGGTAAAGGACTTCTCTG 581
BSNT_02598___ 582 TGTGTATGAAGGTTTCCTTGCTTCATTAAAAGGTGA--AACTGTACCTC- 628
.||.|||||||||||||||||||||||||.|||.|| |||| |.|.||
BPUM_1483 582 CGTATATGAAGGTTTCCTTGCTTCATTAAGAGGAGAGGAACT-TCCTTCG 630
BSNT_02598___ 629 -AGAAAGCAGTTCTT--CCGTCACTTGACGACATGGTCAGCGCAGAGCAT 675
|||..|| .|||| ||..|..|..|.||..|.|||||.|||||||||
BPUM_1483 631 AAGATGGC--CTCTTTGCCAACGTTAAAAGAGCTTGTCAGTGCAGAGCAT 678
BSNT_02598___ 676 CACAAGAGCGCGCAAAG-CATGATGAATACCGAAGATATTGAATTTGGAT 724
||.||.||.||.||||| ||| |||||.||.||||||||.||||||||.|
BPUM_1483 679 CATAAAAGTGCACAAAGCCAT-ATGAACACTGAAGATATCGAATTTGGTT 727
BSNT_02598___ 725 TCTGTACCGAAGTGATGGTTAGGCTTG-ATCAGACAAAAAGAGAGTTC-- 771
..|||||.|||.|.|||||.|...||| |..|||||||.|| ||
BPUM_1483 728 ATTGTACTGAATTTATGGTGAAATTTGAAGAAGACAAACAG-----TCCT 772
BSNT_02598___ 772 -----GACGAAGGCACGTTCAGGCAAGACCTCAGCCAGTTCGGAGATTCT 816
|| |||.| |.|||||..|||||.|.|||.|.|||||||||||.
BPUM_1483 773 TTGATGA-GAATG--CTTTCAGAGAAGACTTAAGCGAATTCGGAGATTCA 819
BSNT_02598___ 817 CTGCTTGTGATTGCGGATGAATCGCTGGCGAAGGTTCATATTCATGCTGA 866
||.||||||.|..|.||||||.|||||||.||.||||||||||||||.||
BPUM_1483 820 CTTCTTGTGGTATCAGATGAAACGCTGGCAAAAGTTCATATTCATGCAGA 869
BSNT_02598___ 867 AGAGCCGGGAAACGTGTTAAACTACGCCCAGCATTACGGTGAATTGATCA 916
..||||.||..|.||.|||..|||.||.||||..|||||.....|.||||
BPUM_1483 870 GCAGCCTGGGGATGTCTTATCCTATGCACAGCGCTACGGCAGCCTAATCA 919
BSNT_02598___ 917 AAATAAAAATAGAAAATATGAGAGAACAGCATACCTCTATCATCAGTCAA 966
|.||.|||||.|||||.||||||||.|||||||..||.||..|.|...||
BPUM_1483 920 ATATGAAAATTGAAAACATGAGAGAGCAGCATAGTTCAATTGTGAACGAA 969
BSNT_02598___ 967 GAAAGCAA--------ACCTGCAG--ACAACGAAA------TACCGC--C 998
|||| || ||||||.| || ||.||| |.|.|| |
BPUM_1483 970 GAAA--AAGAACATGCACCTGCTGCTAC-ACCAAAGGCATCTGCTGCTGC 1016
BSNT_02598___ 999 GGCAAAGCAGCCGTATGGCATTGTGACTGTGGCGATGGGAGAAGGAATTT 1048
.|.|||.||||..|.||||.|.||.|.|||.||.|||||||||||||||.
BPUM_1483 1017 TGAAAAACAGCGCTTTGGCGTCGTCAGTGTCGCAATGGGAGAAGGAATTG 1066
BSNT_02598___ 1049 CAGACCTATTCAAAAGCATTGGCGCTTCTGTTGTGATTGAAGGCGGCCAG 1098
|.|||.|.||.|||||.||.||.|||||.|||||.|||||||||||.|||
BPUM_1483 1067 CTGACTTGTTTAAAAGTATCGGAGCTTCCGTTGTCATTGAAGGCGGACAG 1116
BSNT_02598___ 1099 ACCATGAACCCAAGCACTGAGGATATTG---------TTGATGCCGTGAA 1139
||.||||||||.|||||.||.||.|||| |||| ||
BPUM_1483 1117 ACAATGAACCCGAGCACAGAAGACATTGTCACAGCAATTGA-------AA 1159
BSNT_02598___ 1140 GTCTGTAAATGCAGATACGGTATTTATCCTGCCTAACAACTCCAACATTA 1189
| .|||.||||.||.|||||.||||||.|.|||||.||.||.||.|||.
BPUM_1483 1160 G--CGTACATGCCGAAACGGTCTTTATCTTACCTAATAATTCTAATATTG 1207
BSNT_02598___ 1190 TCATGGCTGCTAACCAAGCGGCCAGCG-------TAGTGGATGAACAGGT 1232
|||||||.||.||.||.|||||.|..| |.||| ||||
BPUM_1483 1208 TCATGGCAGCGAAACAGGCGGCAACTGTCTCAAATCGTG-------AGGT 1250
BSNT_02598___ 1233 TTTTGTCATTCCTGCTAAAACGGTTCCGCAAGGGATGTCAGCCCTGCTGG 1282
|.|.||||||||..|.||.||.|||||.|||||.|||||.||.||.||..
BPUM_1483 1251 TGTGGTCATTCCAACGAAGACCGTTCCTCAAGGAATGTCGGCACTTCTTT 1300
BSNT_02598___ 1283 CTTTTAACCCGGATCAAGAAGCT------GAAGCGAACGAGGCCAATATG 1326
||.|.| ||.|||.|||| ||||..|||||.||....|||
BPUM_1483 1301 CTCTCA------ATGAAGCAGCTTCAAACGAAGACAACGAAGCGGCGATG 1344
BSNT_02598___ 1327 CTAAGCGCCATTCAGCAA-GTAAAAAGCGGACAGGTGACGTTCTCAGTCA 1375
|||...||||||.| ||| ||.||||||||.||..|.||.||..||||.|
BPUM_1483 1345 CTAGATGCCATTGA-CAACGTGAAAAGCGGCCAAATCACCTTTGCAGTGA 1393
BSNT_02598___ 1376 GAGATACTCATATTGACGGTAAAGATATTAAAAAAGGCGACTTTATGGGC 1425
|||||||.||.||.||.||.|..||||||...|||||.||.|.||||||
BPUM_1483 1394 GAGATACCCAAATCGATGGAATCGATATTGCTAAAGGAGATTATATGGG- 1442
BSNT_02598___ 1426 ATTCT---GAATGGAACGATTATCGGCACTTCTGAAAATC----AGCTGT 1468
||| .||.||||..||.|.|...|||.|..|||||| ||.||
BPUM_1483 1443 --TCTCTATAACGGAAAAATCACCTTAACTGCGAAAAATCAATTAGATG- 1489
BSNT_02598___ 1469 CAGCCGCGAAAATGCTGCTGTCAGAAATGATCGGAGAAGATGATGAAATC 1518
||||...|.|| ||..||.|..|||||.|...||||||||||||.|||
BPUM_1483 1490 CAGCTAAGGAA---CTTTTGACCAAAATGGTGACAGAAGATGATGAGATC 1536
BSNT_02598___ 1519 GTGACCATTCTATATGGTGAGGATG---CGTCTCAGGAAGAAGCT-GAGC 1564
||.||.||..|..|.||.||.|||| ||||| |||| ||.| ||..
BPUM_1483 1537 GTTACGATCATTAAAGGGGAAGATGCATCGTCT---GAAG-AGATGGACG 1582
BSNT_02598___ 1565 AGCTTGAAGCGTTTCTCAGTGAA-AAGTAC----GAGGAGATTGAGGTTG 1609
||.|.|||||.||| |.|||| || || ||.||.||.||.||||
BPUM_1483 1583 AGTTAGAAGCCTTT---ATTGAAGAA--ACATTTGAAGATATAGAAGTTG 1627
BSNT_02598___ 1610 AGATCCACAATGGGAAACAGCCTCTGTATTCGTATATAGTTT--CAGCAG 1657
|..|||||.||||.||||||||.||.||||| |||||.||| |.|..|
BPUM_1483 1628 AAGTCCACGATGGAAAACAGCCGCTTTATTC--ATATATTTTGGCTGTGG 1675
BSNT_02598___ 1658 AATAG 1662
||||.
BPUM_1483 1676 AATAA 1680
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