Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02593 and BPUM_1478

See Amino acid alignment / Visit BSNT_02593 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_02593___rpe.1.24716.seq
#    -bsequence dna-align/BPUM_1478___rpe.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02593___rpe-BPUM_1478___rpe.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02593___rpe-BPUM_1478___rpe.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02593___rpe
# 2: BPUM_1478___rpe
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity:     455/680 (66.9%)
# Similarity:   455/680 (66.9%)
# Gaps:          55/680 ( 8.1%)
# Score: 1437.5
# 
#
#=======================================

BSNT_02593___      1 ATGATAAAGGTT------GCACCATCTATTCTTTCCGCTGATTTTGCCGC     44
                           |.||||      ||.||.||.|||.|.||.||.|||||||||..
BPUM_1478___r      1 ------ATGGTTTATATAGCCCCTTCCATTTTATCAGCAGATTTTGCCAA     44

BSNT_02593___     45 TTTAGGCAATGAGATTAAAGATGTAGAAAAAGGCGGAGCCGATTGTATTC     94
                     |||.|..||.||.||....|||||.|||.|||||||.||.||||..||||
BPUM_1478___r     45 TTTGGAGAAAGATATCCGTGATGTGGAACAAGGCGGTGCAGATTACATTC     94

BSNT_02593___     95 ATATTGATGTTATGGACGGCCATTTTGTCCCGAATATCACAATCGGTCCG    144
                     ||||.|||||.|||||.||.||||||||.||||||||.|||.||||.|| 
BPUM_1478___r     95 ATATCGATGTCATGGATGGTCATTTTGTTCCGAATATGACATTCGGGCC-    143

BSNT_02593___    145 CTGA----TTGTAGAAGCAGTCCGGCCGGTAACGGATCTGCCGCTTGATG    190
                        |    |.||.|||||..||.|.|||...|||..|||.||||||||||
BPUM_1478___r    144 ---AAATGTCGTCGAAGCGATCAGACCGCATACGCGTCTTCCGCTTGATG    190

BSNT_02593___    191 TCCATTTAATGATAGAAGAGCCGGATCGTTATATCCCGGCTTTTGCGAAA    240
                     |.||..|.|||||.||..||||.|||||.|||||.||.||.||.||.|||
BPUM_1478___r    191 TTCACCTCATGATTGAGCAGCCAGATCGGTATATTCCTGCATTCGCAAAA    240

BSNT_02593___    241 GCAGGCGCAGATATCCTGTCTGTACATGCTGAGGCATGTCCGCACCTGCA    290
                     ||.|||||.|||||..|.|||||.||||..||.||.|||||||||.|.||
BPUM_1478___r    241 GCTGGCGCTGATATTATTTCTGTTCATGTGGAAGCTTGTCCGCACTTACA    290

BSNT_02593___    291 CCGTACCATCCAGCTCATTAAAGAGCAAGGAGTGAAGGCCGGAGTAGTTC    340
                     .||.||.||.||.|..||.|||||.|||||.||.||.||.||.||.||..
BPUM_1478___r    291 TCGAACAATACAACATATAAAAGAACAAGGTGTAAAAGCAGGGGTCGTCT    340

BSNT_02593___    341 TAAACCCGCATACTCCTGT---TCAAGTCATCGAGCATGTTTTCGACGAT    387
                     |.||.||.||.||.|||||   |||   |||.||||||||.||.||.|||
BPUM_1478___r    341 TGAATCCCCACACACCTGTGTCTCA---CATTGAGCATGTATTAGAAGAT    387

BSNT_02593___    388 CTTGATCTTGTTCTTTTAATGACGGTGAACCCGGGCTTCGGCGGCCAGAA    437
                     .|.||.||.||..|.||.|||||.||||||||.||.||.||.||.|||..
BPUM_1478___r    388 GTGGACCTAGTGTTATTCATGACTGTGAACCCTGGTTTTGGTGGACAGGC    437

BSNT_02593___    438 ATTTATTCATTCAGTCCTTCCTAAGATAAAAGAGGT-TAAGCGAATGGCG    486
                     ||||||||..||.|||||....|||.|||||||.|| .|||| |.||...
BPUM_1478___r    438 ATTTATTCCATCTGTCCTCAAGAAGGTAAAAGAAGTAAAAGC-ACTGAGT    486

BSNT_02593___    487 GATGAAAAAGGAAAAAAAGATCTGTTAATTGAAGTAGACGGCGGCGTCAA    536
                     ||..||||.||...||..|||.|..|.||.|||.||||||||||.|||||
BPUM_1478___r    487 GAACAAAAGGGCTTAACCGATTTACTGATAGAAATAGACGGCGGTGTCAA    536

BSNT_02593___    537 -----------CAAAGAAACCGCTCCGCTCGTCATTGAAGCGGGCGCAAA    575
                                ||||||         |||  .||..|||||.|||||.||
BPUM_1478___r    537 TGTAGAGACTGCAAAGA---------GCT--GCAAGGAAGCTGGCGCTAA    575

BSNT_02593___    576 TTTACTCGTTGCCGGTTCAGCTGTTTATGG-GCAGTCTGACCGCAAAAAA    624
                     |||||||||.||.||.||.||.||.||.|| |.||.| .|||||..|..|
BPUM_1478___r    576 TTTACTCGTCGCGGGCTCTGCGGTATACGGTGAAGAC-AACCGCGCAGTA    624

BSNT_02593___    625 GCAATTTCTGAAATCAGAGGAAGTAAATAA    654
                     ||.||....|.|||..|| ||||  .||||
BPUM_1478___r    625 GCGATCCAAGCAATTCGA-GAAG--CATAA    651


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.