Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02593 and BPUM_1478
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_02593___rpe.1.24716.seq
# -bsequence dna-align/BPUM_1478___rpe.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02593___rpe-BPUM_1478___rpe.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02593___rpe-BPUM_1478___rpe.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02593___rpe
# 2: BPUM_1478___rpe
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity: 455/680 (66.9%)
# Similarity: 455/680 (66.9%)
# Gaps: 55/680 ( 8.1%)
# Score: 1437.5
#
#
#=======================================
BSNT_02593___ 1 ATGATAAAGGTT------GCACCATCTATTCTTTCCGCTGATTTTGCCGC 44
|.|||| ||.||.||.|||.|.||.||.|||||||||..
BPUM_1478___r 1 ------ATGGTTTATATAGCCCCTTCCATTTTATCAGCAGATTTTGCCAA 44
BSNT_02593___ 45 TTTAGGCAATGAGATTAAAGATGTAGAAAAAGGCGGAGCCGATTGTATTC 94
|||.|..||.||.||....|||||.|||.|||||||.||.||||..||||
BPUM_1478___r 45 TTTGGAGAAAGATATCCGTGATGTGGAACAAGGCGGTGCAGATTACATTC 94
BSNT_02593___ 95 ATATTGATGTTATGGACGGCCATTTTGTCCCGAATATCACAATCGGTCCG 144
||||.|||||.|||||.||.||||||||.||||||||.|||.||||.||
BPUM_1478___r 95 ATATCGATGTCATGGATGGTCATTTTGTTCCGAATATGACATTCGGGCC- 143
BSNT_02593___ 145 CTGA----TTGTAGAAGCAGTCCGGCCGGTAACGGATCTGCCGCTTGATG 190
| |.||.|||||..||.|.|||...|||..|||.||||||||||
BPUM_1478___r 144 ---AAATGTCGTCGAAGCGATCAGACCGCATACGCGTCTTCCGCTTGATG 190
BSNT_02593___ 191 TCCATTTAATGATAGAAGAGCCGGATCGTTATATCCCGGCTTTTGCGAAA 240
|.||..|.|||||.||..||||.|||||.|||||.||.||.||.||.|||
BPUM_1478___r 191 TTCACCTCATGATTGAGCAGCCAGATCGGTATATTCCTGCATTCGCAAAA 240
BSNT_02593___ 241 GCAGGCGCAGATATCCTGTCTGTACATGCTGAGGCATGTCCGCACCTGCA 290
||.|||||.|||||..|.|||||.||||..||.||.|||||||||.|.||
BPUM_1478___r 241 GCTGGCGCTGATATTATTTCTGTTCATGTGGAAGCTTGTCCGCACTTACA 290
BSNT_02593___ 291 CCGTACCATCCAGCTCATTAAAGAGCAAGGAGTGAAGGCCGGAGTAGTTC 340
.||.||.||.||.|..||.|||||.|||||.||.||.||.||.||.||..
BPUM_1478___r 291 TCGAACAATACAACATATAAAAGAACAAGGTGTAAAAGCAGGGGTCGTCT 340
BSNT_02593___ 341 TAAACCCGCATACTCCTGT---TCAAGTCATCGAGCATGTTTTCGACGAT 387
|.||.||.||.||.||||| ||| |||.||||||||.||.||.|||
BPUM_1478___r 341 TGAATCCCCACACACCTGTGTCTCA---CATTGAGCATGTATTAGAAGAT 387
BSNT_02593___ 388 CTTGATCTTGTTCTTTTAATGACGGTGAACCCGGGCTTCGGCGGCCAGAA 437
.|.||.||.||..|.||.|||||.||||||||.||.||.||.||.|||..
BPUM_1478___r 388 GTGGACCTAGTGTTATTCATGACTGTGAACCCTGGTTTTGGTGGACAGGC 437
BSNT_02593___ 438 ATTTATTCATTCAGTCCTTCCTAAGATAAAAGAGGT-TAAGCGAATGGCG 486
||||||||..||.|||||....|||.|||||||.|| .|||| |.||...
BPUM_1478___r 438 ATTTATTCCATCTGTCCTCAAGAAGGTAAAAGAAGTAAAAGC-ACTGAGT 486
BSNT_02593___ 487 GATGAAAAAGGAAAAAAAGATCTGTTAATTGAAGTAGACGGCGGCGTCAA 536
||..||||.||...||..|||.|..|.||.|||.||||||||||.|||||
BPUM_1478___r 487 GAACAAAAGGGCTTAACCGATTTACTGATAGAAATAGACGGCGGTGTCAA 536
BSNT_02593___ 537 -----------CAAAGAAACCGCTCCGCTCGTCATTGAAGCGGGCGCAAA 575
|||||| ||| .||..|||||.|||||.||
BPUM_1478___r 537 TGTAGAGACTGCAAAGA---------GCT--GCAAGGAAGCTGGCGCTAA 575
BSNT_02593___ 576 TTTACTCGTTGCCGGTTCAGCTGTTTATGG-GCAGTCTGACCGCAAAAAA 624
|||||||||.||.||.||.||.||.||.|| |.||.| .|||||..|..|
BPUM_1478___r 576 TTTACTCGTCGCGGGCTCTGCGGTATACGGTGAAGAC-AACCGCGCAGTA 624
BSNT_02593___ 625 GCAATTTCTGAAATCAGAGGAAGTAAATAA 654
||.||....|.|||..|| |||| .||||
BPUM_1478___r 625 GCGATCCAAGCAATTCGA-GAAG--CATAA 651
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