Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02581 and BPUM_1468
See
Amino acid alignment /
Visit
BSNT_02581 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_02581___rpoZ.1.24716.seq
# -bsequence dna-align/BPUM_1468___rpoZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02581___rpoZ-BPUM_1468___rpoZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02581___rpoZ-BPUM_1468___rpoZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02581___rpoZ
# 2: BPUM_1468___rpoZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 208
# Identity: 157/208 (75.5%)
# Similarity: 157/208 (75.5%)
# Gaps: 8/208 ( 3.8%)
# Score: 571.0
#
#
#=======================================
BSNT_02581___ 1 ATGTTAGATCCGTCAATTGATTCTTTAATGAATAAATTAGATTCAAAATA 50
|||||||||||.||||||||.||.||.|||||.|||.|.|||||||||||
BPUM_1468___r 1 ATGTTAGATCCTTCAATTGACTCATTGATGAACAAACTTGATTCAAAATA 50
BSNT_02581___ 51 TACGCTCGTGACTGTTTCTGCGAGACGCGCCCGTGAAATGCAAATCAAAA 100
|||.||.||.||.||.|||||..|.||.||.|||||||||||.|||.|..
BPUM_1468___r 51 TACACTTGTAACAGTATCTGCACGCCGTGCACGTGAAATGCAGATCCACC 100
BSNT_02581___ 101 AAGACCA--AATGATTGAACATACGATTTCACACAAATATGTAGGCAAAG 148
||||.|| || ||.|||.||||.|..||..||||||.|||||||||||
BPUM_1468___r 101 AAGATCAGCAA--ATCGAAAATACAAAGTCTTACAAATTTGTAGGCAAAG 148
BSNT_02581___ 149 CTTTAGAAGAAATTGATGCAGGCCTGCTTT--CGTTTGAAAAGGAAGACC 196
|..|.||||||||.|||||.||.|| ||| |.||||||||.||.||.|
BPUM_1468___r 149 CACTTGAAGAAATCGATGCCGGTCT--TTTGACATTTGAAAAAGAGGATC 196
BSNT_02581___ 197 GCGAATAG 204
..|||||.
BPUM_1468___r 197 AAGAATAA 204
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.