Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02572 and BPUM_1462
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_02572___ylnF.1.24716.seq
# -bsequence dna-align/BPUM_1462.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02572___ylnF-BPUM_1462.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02572___ylnF-BPUM_1462.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02572___ylnF
# 2: BPUM_1462
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 573
# Identity: 315/573 (55.0%)
# Similarity: 315/573 (55.0%)
# Gaps: 153/573 (26.7%)
# Score: 783.5
#
#
#=======================================
BSNT_02572___ 1 ATGCTTCCGCTGCA-----CATTAGCCTGGAAAAGAAGAAGGTTG-TGAT 44
||||||||..|.|| ..|||.|| ||..||.||| || |.||
BPUM_1462 1 ATGCTTCCAGTCCATCTTGATTTAACC----AATCAACAAG--TGCTCAT 44
BSNT_02572___ 45 TGCGGGGGGCGGCAGCATCGCTCTCAGAA-GGCTGAAATCGGTGATTTCT 93
|||.||.||.||.|..||.||....|||| |||.|| ||.|.|.|.|
BPUM_1462 45 TGCCGGCGGTGGAAAAATAGCGGCAAGAAGGGCAGA----GGCGCTATGT 90
BSNT_02572___ 94 GAGGGAGC--TG--ATATAACGCTCGTCAGTCCGGATGTTGAACCGGAAA 139
|..|||| || ||||.||..||||.|||||.||..||
BPUM_1462 91 -ATAGAGCCTTGCCATATCACCATCGTGAGTCCTGACATT---------- 129
BSNT_02572___ 140 TC--AAGCAAATGGCAGAAGAGCGACGTATCA-----------------A 170
|| ||| |.||||| ||||.||| |
BPUM_1462 130 TCTAAAG-AGATGGC---------ACGTCTCATTGATACATACAACCTGA 169
BSNT_02572___ 171 ATGGGAAA-AACGGACAATTGAAAAAGAAGATTATCTCA---ATGCTTTC 216
||.||||| ||..||.|.|.||....||||||| |.| |||||||.
BPUM_1462 170 ATTGGAAAGAAAAGAAAGTGGATGCTGAAGATT---TAAAGGATGCTTTT 216
BSNT_02572___ 217 TTCATTATTGCTGCGACGGATAATGCGGCAGTGAACAAA-GAA---ATTG 262
||||||.|.|||||.||..||.||.||||.|| ||| ||| ||||
BPUM_1462 217 TTCATTGTCGCTGCTACAAATGATCCGGCGGT----AAATGAATGGATTG 262
BSNT_02572___ 263 CCCAATCCGCTTCGCCTTTTCAGCTTGTCAATTGTGTCAGTGACGCTGAG 312
|||||.|.||...|||...|||||||||.||||||||.||..|..|.||.
BPUM_1462 263 CCCAAACAGCAAGGCCCCATCAGCTTGTGAATTGTGTGAGCCAATCAGAA 312
BSNT_02572___ 313 CTTGGCAATGT-ATATATGCCGAAAATTGTCAAAAGAGGGCATGTCACTG 361
||||||||||| || ..||||.||..|.||||||..||||...||.||..
BPUM_1462 313 CTTGGCAATGTGAT-CGTGCCAAAGGTGGTCAAAGCAGGGAGAGTGACGA 361
BSNT_02572___ 362 TGTCTGTTTCTACAAGCGGAGCCAGTCCAAAGCAC--ACGAAAGAGCTTG 409
|.||.||.|||||||||||.||.||.|| |||.| ||.|||.||||.|
BPUM_1462 362 TTTCAGTCTCTACAAGCGGTGCGAGCCC--AGCTCGGACAAAACAGCTGG 409
BSNT_02572___ 410 CTGAAAACGTGGATAAGCTGATTGACGGCGATTTTATTGCTGAAGTGAAC 459
|| |.||| .||||| || .|||||| |||||
BPUM_1462 410 CT------GCGGA------AATTGA----GA---CATTGCT----TGAAC 436
BSNT_02572___ 460 AGG-------------------------CTTTATCAGGTGAGAAGGAAGA 484
|.| ||.|||| || |||.||.|
BPUM_1462 437 AAGAGGATGTAGATGCACTTGACGCTCTCTATATC----GA-AAGAAAAA 481
BSNT_02572___ 485 AATAA------------------ 489
||.||
BPUM_1462 482 AACAACAAAGAAAAAGCCGATAA 504
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