Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_02569 and BPUM_1460

See Amino acid alignment / Visit BSNT_02569 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_02569___ylnD.1.24716.seq
#    -bsequence dna-align/BPUM_1460___cysG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02569___ylnD-BPUM_1460___cysG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02569___ylnD-BPUM_1460___cysG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02569___ylnD
# 2: BPUM_1460___cysG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     541/804 (67.3%)
# Similarity:   541/804 (67.3%)
# Gaps:          78/804 ( 9.7%)
# Score: 1775.5
# 
#
#=======================================

BSNT_02569___      1 ATGGGGAAAGTATATATTGTAGGAGCGGGTCCTGGTGACCCTGATCTGCT     50
                     ||||||||||||||.|||||.||.||.||.|||||.||.||.||..|..|
BPUM_1460___c      1 ATGGGGAAAGTATACATTGTGGGGGCTGGACCTGGGGATCCAGACTTAAT     50

BSNT_02569___     51 GACAATTAAAGCGCTGAAAGCCATTGAAAAAGCTGATGTCATCTTATATG    100
                     .|||.|.|||||.|..||.||.||..|..|.||.||||||||.|||||||
BPUM_1460___c     51 TACATTAAAAGCCCATAAGGCAATACAGCAGGCAGATGTCATTTTATATG    100

BSNT_02569___    101 ACAGATTAGTAAATAAAGAGATTTTACAAT-----ATGCCAAA---GAGC    142
                     |..|..|.||.|||.||||.||     |.|     |.||||||   ||| 
BPUM_1460___c    101 ATCGTCTTGTCAATCAAGAAAT-----ACTCGCCCACGCCAAACCCGAG-    144

BSNT_02569___    143 AAGCAGACCTGATCTACTGCGGGAAGCTTCCAGATTTTCATACGATGAAG    192
                       ||.||..|.||.||.|||||.|||||.||..||..|||||||||||..
BPUM_1460___c    145 --GCGGAATTAATTTATTGCGGAAAGCTGCCGAATCATCATACGATGAGA    192

BSNT_02569___    193 CAGGAAACCATCAATCGATTTCTTGTGAAGTATGCGCAAAAAGGGAAAAT    242
                     ||||||.||||.|||..|...|||||.|...||||..||.|||||||..|
BPUM_1460___c    193 CAGGAAGCCATTAATGAAGCCCTTGTCACCCATGCAAAAGAAGGGAATGT    242

BSNT_02569___    243 GGTTGTCAGACTGAAAGGCGGAGACCCTTTTGTGTTCGGCAGAGGAGGGG    292
                     .||.|||.|.|||||||||||.||.||.|||||.||.||..|.||.||.|
BPUM_1460___c    243 TGTCGTCCGGCTGAAAGGCGGCGATCCCTTTGTATTTGGACGCGGCGGTG    292

BSNT_02569___    293 AAGAAGCGGAATGCCTCTCTGAAAATGGAATTCCGTTTGAAATCATCCCC    342
                     |||||...||||||.|..||||..||||||||||.|.||||.|..||||.
BPUM_1460___c    293 AAGAAATCGAATGCTTAGCTGAGCATGGAATTCCATATGAAGTTGTCCCA    342

BSNT_02569___    343 GGCATTACGTCTGGAATCGCGGCAGCCGCTTATGCCGGGATTCCTGTTAC    392
                     ||.|||||.|||||.||.||||||||.||||||||.||.|||||.||.||
BPUM_1460___c    343 GGAATTACTTCTGGCATTGCGGCAGCAGCTTATGCAGGCATTCCCGTAAC    392

BSNT_02569___    393 TCATCGGGAGGCGGGCTCTAACGTCGCTTTTGTAACGGGTCATTATAAAA    442
                     .||.||.||.....||||.||.||.||.|||||.||||||||.|||.|||
BPUM_1460___c    393 CCACCGTGAATTCAGCTCGAATGTTGCGTTTGTCACGGGTCACTATCAAA    442

BSNT_02569___    443 AAGAAGAAGATTTTGAGGAAAAGTGGAAAGCGCTGGCTACAGGAATTGAT    492
                     ||||.||..|||||||.|||||.|||.|||||||||||||.||.||||||
BPUM_1460___c    443 AAGATGAGCATTTTGAAGAAAAATGGGAAGCGCTGGCTACGGGGATTGAT    492

BSNT_02569___    493 ACACTTGTCATCTATATGGGTATCAAAAA---------CGTGCAGCAGAT    533
                     ||.|||||.||.||.|||||..|||||||         .|||||||||.|
BPUM_1460___c    493 ACCCTTGTGATTTACATGGGCGTCAAAAATGTAGAAAGAGTGCAGCAGCT    542

BSNT_02569___    534 --TGAAAGAAAACTCCTTGAAAACGGCAGGGACGGTTCT---ACGCCGGC    578
                       |||.|.||||     ||  .|||       ||.|.||   ||.||.||
BPUM_1460___c    543 TCTGATAAAAAA-----TG--GACG-------CGATCCTGAAACACCAGC    578

BSNT_02569___    579 AGCCTTTATTCATTGGGGAACAACGGAC-AAGCAAAAATCTGTTTTTTGT    627
                     |||.|||||.||.||||||||.|| ||| |.||||||..|...||.|||.
BPUM_1460___c    579 AGCGTTTATACACTGGGGAACCAC-GACGAGGCAAAAGACGACTTGTTGC    627

BSNT_02569___    628 ACAGTTGAAACCCTTTCAGAAA-CGGTGATAAAAGAAAACATTACAA--A    674
                     ||.||.|..||.||.||.|||| ||.||| |||||||..|||  |.|  |
BPUM_1460___c    628 ACTGTAGCGACACTGTCTGAAACCGTTGA-AAAAGAAGGCAT--CGAGCA    674

BSNT_02569___    675 TCCGAGTTTAATTGTCATTGGAAATGTTGTAAATTATCACTATAAGCTGG    724
                     |||.||||||||.||..||||..||||.||..|||.||||.|.||||||.
BPUM_1460___c    675 TCCAAGTTTAATCGTGGTTGGGGATGTCGTTCATTTTCACCAAAAGCTGA    724

BSNT_02569___    725 AATGGTTTGAATCTG----AACTGAAAAAACAAGATTTAAGCGAGGCGTT    770
                     |.|||||||||.|||    .|.|||.|||..|                  
BPUM_1460___c    725 ACTGGTTTGAACCTGCTCTCATTGAGAAATGA------------------    756

BSNT_02569___    771 GTAA    774
                         
BPUM_1460___c    756 ----    756


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02569 and BPUM_1460

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
