Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02562 and BPUM_1454
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_02562___pyrF.1.24716.seq
# -bsequence dna-align/BPUM_1454___pyrF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02562___pyrF-BPUM_1454___pyrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02562___pyrF-BPUM_1454___pyrF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02562___pyrF
# 2: BPUM_1454___pyrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity: 502/754 (66.6%)
# Similarity: 502/754 (66.6%)
# Gaps: 83/754 (11.0%)
# Score: 1551.5
#
#
#=======================================
BSNT_02562___ 1 ATGAAAAACAACCTGCCCATCATCGCGCTTGATTTTGCATCAGCTGAAGA 50
||| ||..||.|||||||||||||||||||||||.||||||...|.||
BPUM_1454___p 1 ATG---AAGCACTTGCCCATCATCGCGCTTGATTTTCCATCAGGACAGGA 47
BSNT_02562___ 51 AACACTTGCGTTCTTAGCGCCTTTTCAGCAAG---AACCGTTATTTGTAA 97
..|.||.||.||.||||..||.||| .||| .|||.||||||||.|
BPUM_1454___p 48 GGCGCTCGCCTTTTTAGAACCCTTT---GAAGGGACACCATTATTTGTGA 94
BSNT_02562___ 98 AGGTTGGAATGGAGCTTTTTTATCAAGAAGG----GCCATCGATCGTGAA 143
||||.||.||||||||.|||||.|||||||| |.|||| |.|||.
BPUM_1454___p 95 AGGTCGGCATGGAGCTGTTTTACCAAGAAGGACCTGTCATC---CTTGAG 141
BSNT_02562___ 144 ACAATTAAAAGAAAGAAACTGTGAGCTG--TTTT--TAGATCTAAAGCTT 189
.|..|| |||||||.|||.| ||.| |||| |.|||||.||..|.
BPUM_1454___p 142 GCGCTT-AAAGAAAAAAATT----GCCGCATTTTCCTCGATCTCAAATTA 186
BSNT_02562___ 190 CATGACATCCCGACTACTGTAAACAAAGCGATGAAGCGCCTTGCCAGT-C 238
||||||||.||.||.||.||.||.|||||.|||||.||.|||||| || |
BPUM_1454___p 187 CATGACATTCCAACAACGGTGAAAAAAGCAATGAACCGGCTTGCC-GTAC 235
BSNT_02562___ 239 TCGGAGTAGATCTCGTCAATGTTCATGCTGCTGGGGGCAAAAAAATGATG 288
|.||.||.|||||.||.|||||.|||||||||||.||.|||.|.||||||
BPUM_1454___p 236 TTGGCGTTGATCTAGTTAATGTACATGCTGCTGGCGGGAAACAGATGATG 285
BSNT_02562___ 289 CAGGCAGCTCTCGAA-GGCTTAGAAGAAGGTACGCCGGCTGGAAAAAAAC 337
||.||.||..|.||| ||||| |||...||.|||||.||||||.||||||
BPUM_1454___p 286 CAAGCTGCGTTAGAAGGGCTT-GAAAGCGGAACGCCTGCTGGACAAAAAC 334
BSNT_02562___ 338 GTCC-GTCACTTATCGCGGTAACCCAGCTGACAAGCACATCTGAACAAAT 386
|||| |.|| ||||.||.||.||.||||||||.|||||.||.|||.|.||
BPUM_1454___p 335 GTCCAGACA-TTATTGCAGTGACTCAGCTGACGAGCACGTCAGAAGACAT 383
BSNT_02562___ 387 CATGA-AAGATGAACTGCTGATCGAAAAGTCTCTGATTGATACGGTTGTG 435
.|||| ||| .|||.|.||.||.||....||.|||...||.||.||..|.
BPUM_1454___p 384 GATGAGAAG-CGAATTACTTATAGACCGCTCGCTGCAAGAGACTGTCATC 432
BSNT_02562___ 436 CACTACAGCAAAAAGGCGGAAGAAAGCGGACTGGATGGAGTGGTCTGCTC 485
|..|||.|..||..|||..|.|||||.|||||.||.||.||.||.|||||
BPUM_1454___p 433 CGGTACGGGCAATTGGCATATGAAAGTGGACTAGACGGTGTTGTTTGCTC 482
BSNT_02562___ 486 TGTTCATGAAGCAAAAGCCATTTACCAAGCG---GTGTCGCCTTCATTTC 532
||||||||||.|.||||||.|| ||.|.| .|.||.|||...||.|
BPUM_1454___p 483 TGTTCATGAATCCAAAGCCCTT---CATGAGCATATCTCACCTGACTTCC 529
BSNT_02562___ 533 TGACTGTCACTCCGGGGAT-------CAGAATG-TCTGAGGACGCTGCGA 574
|.|||||.||.||.||||| |..|||| ||.|| |..
BPUM_1454___p 530 TCACTGTTACGCCAGGGATTCGTTTACTAAATGATCAGA--------CCG 571
BSNT_02562___ 575 ATGACCAAGTCCGCGTAGCGACGCCTGCCATTGCAAGAGAGAAAGG---T 621
||||.|||...|||||.|||||.||.||...|||||.||||.|||| |
BPUM_1454___p 572 ATGATCAAAAGCGCGTGGCGACCCCAGCTTATGCAAAAGAGCAAGGAGTT 621
BSNT_02562___ 622 TCATCAGCGATTGTAGTAGGACGCTCGATTACAAAAGCGGAAGACCCGGT 671
|||..| |||||.||.|||.|.||.||.||||||||.||..|.||..|
BPUM_1454___p 622 TCACAA---ATTGTTGTCGGAAGGTCAATCACAAAAGCTGATAAACCATT 668
BSNT_02562___ 672 AAAAGCCTATAAGGCTGTCAGACTT-----GAATGGGAGGGAATCAAATC 716
..||||.|||.| |||.|.|| ||.||||||.||
BPUM_1454___p 669 GGAAGCTTATCA-----TCAAATTTTGAAAGAGTGGGAGTGA-------- 705
BSNT_02562___ 717 TTGA 720
BPUM_1454___p 705 ---- 705
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