Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02550 and BPUM_1444

See Amino acid alignment / Visit BSNT_02550 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_02550___lspA.1.24716.seq
#    -bsequence dna-align/BPUM_1444___lspA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02550___lspA-BPUM_1444___lspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02550___lspA-BPUM_1444___lspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02550___lspA
# 2: BPUM_1444___lspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 489
# Identity:     333/489 (68.1%)
# Similarity:   333/489 (68.1%)
# Gaps:          51/489 (10.4%)
# Score: 1041.0
# 
#
#=======================================

BSNT_02550___      1 GTGCTGTATTATATGATTGCACTACTTATTATTGCAGCCGATCAATTGAC     50
                     |||.|.|||||.||.||.|||.|..|.||.|||......||||||||.||
BPUM_1444___l      1 GTGTTCTATTACATAATCGCATTCGTGATGATTTGTTTAGATCAATTAAC     50

BSNT_02550___     51 AAAATGGCTAGTTGTTAAGAACATGGAACTTGGCCAAAGCATTCCGATC-     99
                     |||||||||..||||.||.||.|||...||.||    || ||||..||| 
BPUM_1444___l     51 AAAATGGCTCATTGTCAAAAATATGATGCTCGG----AG-ATTCTTATCC     95

BSNT_02550___    100 ----ATTGATCAGG--TATTCTATATCACCTCCCATCGCAATACGGGTGC    143
                         ||||||  ||  |.||.||||||||.||.||.||.|||.|.||.||
BPUM_1444___l     96 AGTGATTGAT--GGCTTCTTTTATATCACGTCTCACCGAAATTCAGGCGC    143

BSNT_02550___    144 TGCATGGGGGATATTAGCGGGTCAAATGTGGTTTTTCTACCTCATAACAA    193
                     .||||||||.||..|....||.|||||||||||||||||..|.||.|||.
BPUM_1444___l    144 CGCATGGGGAATTCTCCAAGGACAAATGTGGTTTTTCTATGTGATCACAC    193

BSNT_02550___    194 CCGCTGTTATTATTGGTATTGTTTATTA----CATACAGCGTTAT--ACA    237
                     .||.|||||||...||.|||||||||||    || |.|||   ||  |||
BPUM_1444___l    194 TCGTTGTTATTGCGGGAATTGTTTATTATTTGCA-AAAGC---ATGGACA    239

BSNT_02550___    238 AAGGGACAAAGGTTTCTTGGCGTTGCCCTCGGACTT-ATGCTTGGCGGTG    286
                     ||.||||||  |.|.|||||.|||||.|| .|.||| |||||||||||.|
BPUM_1444___l    240 AAAGGACAA--GCTGCTTGGAGTTGCACT-TGCCTTAATGCTTGGCGGAG    286

BSNT_02550___    287 CCATCGGCAACTTTATCGATCGGGCTGTCAGACAGGAAGTTGTGGATTTT    336
                     |.||.||.|||||||||||.||.|.|.||.|.||||||||.||.||||||
BPUM_1444___l    287 CGATTGGGAACTTTATCGACCGCGTTTTCCGTCAGGAAGTGGTAGATTTT    336

BSNT_02550___    337 ATCCAT---GTTATT----ATTGTCAATTACCCGATATTTAACATCGCGG    379
                     ...|||   ||..||    |||.|| |.|||||.||.|||||.||.||.|
BPUM_1444___l    337 GCTCATTTCGTCTTTGGGAATTATC-ACTACCCAATCTTTAATATTGCAG    385

BSNT_02550___    380 ACTCTTCATTATGTGTCGGCGTAATGCTTTTATTTATACAAATGCTGTTG    429
                     |.|||||..|||||||.||.||.||.||..|.||.||.|||||||||||.
BPUM_1444___l    386 ATTCTTCTCTATGTGTAGGAGTTATTCTGCTCTTCATTCAAATGCTGTTA    435

BSNT_02550___    430 GACAGCGGGAAAAAGAAA---AAGGAG-CAA-TAG----    459
                     ||..|      |||||||   |||||| ||| ||.    
BPUM_1444___l    436 GATGG------AAAGAAAACGAAGGAGTCAACTACATGA    468


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