Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02549 and BPUM_1443
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_02549.1.24716.seq
# -bsequence dna-align/BPUM_1443___ylyA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02549-BPUM_1443___ylyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02549-BPUM_1443___ylyA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02549
# 2: BPUM_1443___ylyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 248/405 (61.2%)
# Similarity: 248/405 (61.2%)
# Gaps: 60/405 (14.8%)
# Score: 597.0
#
#
#=======================================
BSNT_02549 1 ATGAAT---GATCAACTGACCGCAATTTATACGGAACTTCTTCTGATGAA 47
||||.| ||.|.|..|| |.|||||.||||||||.||||..|||||
BPUM_1443___y 1 ATGATTGGCGACCTAGAGA---CGATTTACACGGAACTCCTTCAAATGAA 47
BSNT_02549 48 AGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGTTTCTA 97
||||||..|.||..|.|.|.|.|||||.||..|.|..|||| |||
BPUM_1443___y 48 AGAAGAGCTGCAAGCTAAACTGTTTGAATACACATCATTTC--GTT---- 91
BSNT_02549 98 CAAGCCCGC-AAGCA----GCAATCAATCATAAACAAAAAGCAACTCTGA 142
|| ||||| .|||| .||||.||..|....||||..||.||.||..
BPUM_1443___y 92 CA--CCCGCTGAGCATGTCTCAATGAACGAGGTTCAAACGGCCACGCTTC 139
BSNT_02549 143 TCTATCATATTAAAGAAGAGCTTCAAGACGT-TCTCCTTGC-ATTGTCCA 190
|.||.||.||.||||||||.||||||||.|| ||| ||.|| |||| |.|
BPUM_1443___y 140 TTTACCACATCAAAGAAGAACTTCAAGATGTGTCT-CTCGCTATTG-CAA 187
BSNT_02549 191 AAATCGAAAACGGCACATTCGGATA-CTGTGAAGAAACCGGGGCTCCCAT 239
||||.||..|.||.||.|..|| || .|||||.|.|||.||.|.|..|||
BPUM_1443___y 188 AAATTGAGCAAGGAACCTATGG-TATTTGTGAGGCAACAGGTGATGTCAT 236
BSNT_02549 240 TCCTCTTG--CAAAGCTGGCAG--TGCTGCCGACTGCCCGAACAGCAAAC 285
|||.|||| |||| || || |.||.||.||.|||||.||||...||
BPUM_1443___y 237 TCCGCTTGAACAAA--TG--AGTATTCTTCCTACCGCCCGCACAGTTGAC 282
BSNT_02549 286 GATTTTCTTTATTCTGTCCAATTTGAAAAAAAA----ACGCTTCCGAT-- 329
||.|||.|.|||..|...||||..||.|||||| .|.||.|..||
BPUM_1443___y 283 GACTTTTTATATCATAAGCAATACGAGAAAAAAGCATTCACTCCTTATCC 332
BSNT_02549 330 --ATGGAAATCAACGGATATCGAATATGG------TCAGGCAC-TGTATG 370
||| |||||...||| ||..||.|.| || ||| ||||.
BPUM_1443___y 333 TCATG--AATCAGATGAT-TCTCATTTTGAAGCCTTC---CACATGTAG- 375
BSNT_02549 371 AATAA 375
BPUM_1443___y 375 ----- 375
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