Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02548 and BPUM_1442
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_02548___ileS.1.24716.seq
# -bsequence dna-align/BPUM_1442___ileS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02548___ileS-BPUM_1442___ileS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02548___ileS-BPUM_1442___ileS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02548___ileS
# 2: BPUM_1442___ileS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2809
# Identity: 2125/2809 (75.6%)
# Similarity: 2125/2809 (75.6%)
# Gaps: 86/2809 ( 3.1%)
# Score: 7895.5
#
#
#=======================================
BSNT_02548___ 1 ATGGATTTTAAAGACACGCTCTTAATGCCGAAAACAGATTTCCCGATGCG 50
|||.|.|..||||||||..|.|||||||||||||||||.|||||.|||.|
BPUM_1442___i 1 ATGAACTACAAAGACACCTTATTAATGCCGAAAACAGAATTCCCTATGAG 50
BSNT_02548___ 51 TGGAAATTTGCCAAACCGTGAGCCTGACATTCAAAAAAAATGGGAGGAAG 100
.||.||.|||||.|||...||||||||.||.|||.|..|.||||..|||.
BPUM_1442___i 51 AGGGAACTTGCCGAACAAAGAGCCTGAAATCCAAGAGGAGTGGGCAGAAA 100
BSNT_02548___ 101 AGGATATCTACCGTCTTGTTCAGGAACGGACGAAAGACCGCCCGAAATTT 150
|.||.|||||.|...|.|||...||.|||||.||||..|||||||..|||
BPUM_1442___i 101 AAGACATCTATCAAATGGTTTTAGAGCGGACAAAAGGACGCCCGACCTTT 150
BSNT_02548___ 151 GTTTTACATGACGGACCTCCGTATGCAAACGGCGACATCCATATGGGCCA 200
.||||.|||||.||||||||.|||||.||.||.|||||.||||||||.||
BPUM_1442___i 151 ATTTTGCATGATGGACCTCCATATGCGAATGGTGACATTCATATGGGGCA 200
BSNT_02548___ 201 TGCACTTAACAAGATTTTGAAAGACTTCATTGTCCGCTATAAATCAATGA 250
.||.||.||.||.|||.|.|||||.||.||||||||.|.|||||||||||
BPUM_1442___i 201 CGCCCTCAATAAAATTCTAAAAGATTTTATTGTCCGTTTTAAATCAATGA 250
BSNT_02548___ 251 GCGGCTACAACGCACCGTATGTGCCGGGCTGGGATACACACGGATTGCCA 300
..||.|.|.||||||||||.||.|||||||||||||||||.||.||.|||
BPUM_1442___i 251 ATGGGTTCCACGCACCGTACGTACCGGGCTGGGATACACATGGCTTACCA 300
BSNT_02548___ 301 ATTGAAACAGCTCTGACAAAAAACAAAAAGGTCAACCGCAAAGAAATGTC 350
|||||||||||.||.||||||||.|||||.|||||.||||||||||||||
BPUM_1442___i 301 ATTGAAACAGCACTCACAAAAAATAAAAAAGTCAAACGCAAAGAAATGTC 350
BSNT_02548___ 351 AGTAGCGGAATTCCGCAAACTATGCGAAGAGTACGCTTGGAAGCAAATCG 400
...|||.||||||||||||||||||||||||||.||||||||||||||||
BPUM_1442___i 351 TACAGCTGAATTCCGCAAACTATGCGAAGAGTATGCTTGGAAGCAAATCG 400
BSNT_02548___ 401 AGGGACAGCGTGAGCAATTCAAACGTCTTGGTGTCCGCGGTGACTGGGAA 450
|.||||||||..|.||.||.||.||..|.||.|||.|.|..||||||||.
BPUM_1442___i 401 AAGGACAGCGCAATCAGTTTAAGCGATTAGGCGTCAGAGCAGACTGGGAC 450
BSNT_02548___ 451 AACCCATATGTGACATTAAAACCGGAATACGAAGCGCAGCAAATCCGCGT 500
||.||||||||.||..||||.||.||.|||||||||||||||||.|..||
BPUM_1442___i 451 AATCCATATGTCACGCTAAAGCCTGAGTACGAAGCGCAGCAAATTCTTGT 500
BSNT_02548___ 501 ATTTGGTGAAATGGCAAAACGAGGCTACATTTACAAAGGCCTTAAACCGG 550
.||.|||||||||||.||..|||||||.|||||||||||..|.|||||.|
BPUM_1442___i 501 CTTCGGTGAAATGGCGAAGAGAGGCTATATTTACAAAGGATTAAAACCAG 550
BSNT_02548___ 551 TTAACTGGTCACCTTCAAGTGAGTCTGCTCTGGCTGAAGCCGAGATCGAA 600
||||||||||.||||||||||||||.|||||.||||||||.||.||.|||
BPUM_1442___i 551 TTAACTGGTCTCCTTCAAGTGAGTCAGCTCTTGCTGAAGCGGAAATTGAA 600
BSNT_02548___ 601 TATCAAGACAAACGTTCAGCATCTATTTACGTCGCTTTTGGTGTAAAAGA 650
|||.||||||||||||||.||||.||||||||..|.|||...||.|||||
BPUM_1442___i 601 TATAAAGACAAACGTTCACCATCCATTTACGTTTCATTTAAAGTGAAAGA 650
BSNT_02548___ 651 CGGAAAAGGCGTTCTTGAAAACGGTGAGCGCATCATCATTTGGACAACAA 700
.|||||||||||.||||||||||..||.|...|||||||.||||||||||
BPUM_1442___i 651 TGGAAAAGGCGTACTTGAAAACGACGAACAATTCATCATCTGGACAACAA 700
BSNT_02548___ 701 CGCCTTGGACAATTCCGGCGAACCTCGGAATCTCAGTGCACCCTGATCTT 750
|.|||||||||.||||.||.|||||.||.||.|..||.||.||..|.||.
BPUM_1442___i 701 CACCTTGGACACTTCCTGCAAACCTTGGTATTTGTGTTCATCCCAACCTA 750
BSNT_02548___ 751 GAGTACAGCGTGATTGCAGTAGGTGAAGACCGCTTTGTCGTAGCAAGTGC 800
|||||||||||..||..|||.||||..||.||.|.|||.||.|||..||.
BPUM_1442___i 751 GAGTACAGCGTTCTTCAAGTGGGTGCTGAGCGATATGTTGTTGCATCTGA 800
BSNT_02548___ 801 CTTAGTCGAAAATGTTGCATCGGC----ATGC--GGATTTGATCAGTATG 844
..|.||.|||.|.|| ||| |.|| ||.|||||..||||||
BPUM_1442___i 801 ACTCGTTGAACAAGT------GGCAAAAACGCTTGGTTTTGAAGAGTATG 844
BSNT_02548___ 845 AAG-TGACAAGAACGGTCAAAGGGAAAGATCTTGAGAACATTATCGCTGA 893
||| ||..|| |||..|.|||||.|||||..|.||.|||.|..|.||.||
BPUM_1442___i 845 AAGTTGTGAA-AACATTAAAAGGAAAAGAATTAGACAACGTCGTTGCAGA 893
BSNT_02548___ 894 ACACCCTCTATATGGCAGAGACTCTCTCGTTATGCTTGGTGAACACGTAA 943
.||.||..|.|||||.|||||.||.||.||.|||||||||||.|||||.|
BPUM_1442___i 894 GCATCCGATTTATGGTAGAGATTCACTTGTGATGCTTGGTGATCACGTGA 943
BSNT_02548___ 944 CAACTGATGCCGGAACAGGCTGTGTTCATACAGCGCCAGGACATGGGGAA 993
||||.|||||.||.||||||||||||||||||||||||||.||.|||||.
BPUM_1442___i 944 CAACAGATGCAGGTACAGGCTGTGTTCATACAGCGCCAGGTCACGGGGAG 993
BSNT_02548___ 994 GATGACTTTATCATCGGCCAAAAATACGGTTTAGATGTGCTTTGCCCGGT 1043
|||||||||||..||.||...||.||||||.||||.||.||.||.||.||
BPUM_1442___i 994 GATGACTTTATTGTCAGCATGAAGTACGGTCTAGACGTACTATGTCCAGT 1043
BSNT_02548___ 1044 CGATGAAAAAGGTGTAATGACAAGCGAAGCTCCTGGCTTTGAAGGCATGT 1093
.||.|||||||||||.||||||...|||||.|||||.||||||||..|.|
BPUM_1442___i 1044 AGACGAAAAAGGTGTCATGACAGAAGAAGCGCCTGGTTTTGAAGGACTAT 1093
BSNT_02548___ 1094 TCTATGATGATGCAAACAAAGCGATCACACAGCAGCTTGATGAAAAAGGC 1143
||||.||.|||||.||.|||||.||||||.|.||||||||.|.|||||||
BPUM_1442___i 1094 TCTACGAAGATGCGAATAAAGCTATCACAGAACAGCTTGAAGCAAAAGGC 1143
BSNT_02548___ 1144 GCACTTGTGAAGCTTGAATTCATTACTCACTCTTATCCGCATGATTGGAG 1193
||.||....|||||.||.||.||.||.||||||||.||||||||||||||
BPUM_1442___i 1144 GCGCTGAAAAAGCTCGACTTTATCACGCACTCTTACCCGCATGATTGGAG 1193
BSNT_02548___ 1194 AACGAAAAAACCAACCATTT-TCAGAGCGACAGCGCAATGGTTTGCGTCT 1242
|||||||||.|||||.|||| || |.||.||.||.||.|||||||||||.
BPUM_1442___i 1194 AACGAAAAAGCCAACGATTTATC-GTGCAACCGCTCAGTGGTTTGCGTCG 1242
BSNT_02548___ 1243 ATTAAAGATTTCAGATCAGACCTGCTGGATGCCATTAAAGAAACCAAATG 1292
||||||||.||||||..||..||.||.|||...|||||||||||.|||||
BPUM_1442___i 1243 ATTAAAGACTTCAGAGAAGCGCTTCTAGATAATATTAAAGAAACGAAATG 1292
BSNT_02548___ 1293 GGTTCCTGAATGGGGCGAG-CA-GCGTTTGCACAACATGGTTCGGGACCG 1340
|||.||.|.|||||||||| || ||.||| .|||.|||||.||.|||.|
BPUM_1442___i 1293 GGTGCCAGCATGGGGCGAGACACGCCTTT--TCAATATGGTGCGTGACAG 1340
BSNT_02548___ 1341 CGGAGACTGGTGTATTTCCAGACAGCGTGCGTGGGGTGTGCCGATTCCGG 1390
.||.||||||||||||||.||||||||||..|||||.||.||.|||||||
BPUM_1442___i 1341 AGGCGACTGGTGTATTTCAAGACAGCGTGTCTGGGGCGTTCCAATTCCGG 1390
BSNT_02548___ 1391 TATTTTACGCTGAAAACGGAGAACCGATTATTACAGATGAAACCATTGAA 1440
|.|||||.||||||||.||.||.||.||.||.||.||.|||||||||.|.
BPUM_1442___i 1391 TCTTTTATGCTGAAAATGGGGAGCCAATCATCACGGACGAAACCATTCAG 1440
BSNT_02548___ 1441 CATGTTTCTGAATTGTTCAGACAGCACGGATCAAACATTTGGTTTGAAAA 1490
|||||.|||.||||.||.|||.|.||.||.||.||.||||||||||||||
BPUM_1442___i 1441 CATGTCTCTCAATTATTTAGAGAACATGGCTCGAATATTTGGTTTGAAAA 1490
BSNT_02548___ 1491 AGAAGCAAAGGATCTTCTTCCGGAAGGCTTTACGCATCCTGGCAGCCCGA 1540
||||||.||.||.||..|.||.|||||||||||.|||||.|||||.||||
BPUM_1442___i 1491 AGAAGCGAAAGAACTATTGCCAGAAGGCTTTACACATCCAGGCAGTCCGA 1540
BSNT_02548___ 1541 ACGGCACATTTACAAAAGAACAGGATATCATGGATGTTTGGTTTGATTCA 1590
||||...|||.||||||||.|||||.|||||||||||.|||||||||||.
BPUM_1442___i 1541 ACGGTGAATTCACAAAAGAGCAGGACATCATGGATGTATGGTTTGATTCC 1590
BSNT_02548___ 1591 GGCTCTTCACATCAAGCAGTGCTTGAAGAACGTGATGACCTCGTTCGCCC 1640
||.|||||.||.|||||.||..|.||||||.|.||||||||.|||||.||
BPUM_1442___i 1591 GGTTCTTCTCACCAAGCCGTTTTAGAAGAAAGAGATGACCTTGTTCGTCC 1640
BSNT_02548___ 1641 GGCTGATTTATACCTAGAGGGATCTGACCAATATCGCGGCTGGTTTAACT 1690
|||.||..|.|||||.||.||.||||||||||||||||||||||||||||
BPUM_1442___i 1641 GGCAGACCTTTACCTTGAAGGCTCTGACCAATATCGCGGCTGGTTTAACT 1690
BSNT_02548___ 1691 CTTCTCTT-TCTACAGCAGTAGCCGTAACAGGGAAAGCGCCGTATAAAGG 1739
|||| ||| ||.||||||||.||.||.||.||.|||||.|||||||||||
BPUM_1442___i 1691 CTTC-CTTATCAACAGCAGTTGCGGTCACTGGAAAAGCACCGTATAAAGG 1739
BSNT_02548___ 1740 TGTGCTCAGCCATGGGTTCGCACTGGATGGAGAAGGACGCAAGATGAGTA 1789
|||.||.|||||.||.||..|.||.|||..||||||||||||||||||||
BPUM_1442___i 1740 TGTTCTGAGCCACGGCTTTACGCTTGATAAAGAAGGACGCAAGATGAGTA 1789
BSNT_02548___ 1790 AATCAATCGGTAACGTTGTTGTTCCGGCTAAAGTCATGAAACAGCTTGGT 1839
|||||.|.||.||.....|||..||..|.||.||...|||.||||||||.
BPUM_1442___i 1790 AATCATTAGGCAATACAATTGACCCAACAAAGGTAGCGAAGCAGCTTGGG 1839
BSNT_02548___ 1840 GCCGACATCTTAAGATTATGGGTATCTTCAGTGGATTATCAGGCGGACGT 1889
||.||.||..|||||.|.|||||||||||.||..|.|||||.|| ||.
BPUM_1442___i 1840 GCGGAGATTCTAAGACTTTGGGTATCTTCTGTCAACTATCAAGC---CGA 1886
BSNT_02548___ 1890 TCGC---GTGTCTGACGCCATTCTAAAGCAGGTTGCGGAAGTATATCGTA 1936
||.| ||||||||.|..||..||||.||.||.||.|||||.|||||||
BPUM_1442___i 1887 TCACCCGGTGTCTGATGATATCTTAAAACAAGTAGCAGAAGTCTATCGTA 1936
BSNT_02548___ 1937 AAATCCGCAACACGTTCCGTTTCCTTCACGGCAACCTTTTCGATTTTGAT 1986
|||||||.|||||||||||.|||||.|||||.|||||.||.||.||||||
BPUM_1442___i 1937 AAATCCGTAACACGTTCCGCTTCCTGCACGGTAACCTATTTGACTTTGAT 1986
BSNT_02548___ 1987 CCAAAAACAAATGCGGTGGCTGTCGAAGATCTTCGTGAAGTGGATCAGTA 2036
|||..|...|||||||||.||||.|||||.|||||.|||||||||||.||
BPUM_1442___i 1987 CCAGCAGTCAATGCGGTGCCTGTAGAAGAGCTTCGCGAAGTGGATCAATA 2036
BSNT_02548___ 2037 TATGCTGATTAAGCTGAACAAGCTGATTGATAAAGTGAAAAAAGCGTATG 2086
|||..||||.||..|.|||||..|||||||.|||||||||||.||.||||
BPUM_1442___i 2037 TATCTTGATCAAATTAAACAAATTGATTGAGAAAGTGAAAAAGGCATATG 2086
BSNT_02548___ 2087 ATGAGTACGAATTTGCGGTTGTGTATCACAGC-ATTCATAATTTCTGCAC 2135
||||.||||||||||||||.|||||||| .|| |||||.||||||||.||
BPUM_1442___i 2087 ATGATTACGAATTTGCGGTCGTGTATCA-TGCGATTCACAATTTCTGTAC 2135
BSNT_02548___ 2136 AATCGAATTGAGCTCATTCTACCTTGATTTTGCAAAAGATATTGTCTACA 2185
|||.||..|.||.||.|||||.||.||.||||||||.|||.|.||.||||
BPUM_1442___i 2136 AATTGAGCTAAGTTCTTTCTATCTCGACTTTGCAAAGGATGTCGTGTACA 2185
BSNT_02548___ 2186 TCGAGCATGCGGATCATCCGGATAGACGCAGCATGCAGACAGTATTCTAC 2235
|.|||||||||||||||||.||..|.||||||||||||||.||.||||||
BPUM_1442___i 2186 TTGAGCATGCGGATCATCCAGACCGCCGCAGCATGCAGACGGTCTTCTAC 2235
BSNT_02548___ 2236 GAAACGCTTCTTGCATTAGTGAAGCTTTCAGCGCCTATCCTTCCACATAC 2285
|||||..|..|.||.||||||||.||..||||.||.||.|||||.|||||
BPUM_1442___i 2236 GAAACATTGATGGCGTTAGTGAAACTGACAGCACCAATTCTTCCGCATAC 2285
BSNT_02548___ 2286 GGCAGACGAATTGTGGTCTCATTTAACATTTGTTGAAGAGCAGAGCGTTC 2335
.|||||.|||||.|||...||.||||..|||||||||||||..||.||||
BPUM_1442___i 2286 AGCAGATGAATTATGGAGCCACTTAAGCTTTGTTGAAGAGCCAAGTGTTC 2335
BSNT_02548___ 2336 AGCTGACCGATATGCCGGAAACAATCGCGGTT--CCAAACAGTGAAGCGA 2383
|..|.||.||||||||.|||....|..||||| .|||.| .||.||||
BPUM_1442___i 2336 AATTAACAGATATGCCAGAAGGTGTGACGGTTTCTCAAGC--GGATGCGA 2383
BSNT_02548___ 2384 CTGAAGAAAAATTTGACCGCTTTATGGCTCTTCGTGATGACGTGTTAAAA 2433
|.||||..||.||||||||||||||||...|.|||||.||.|||.|||||
BPUM_1442___i 2384 CAGAAGCGAAGTTTGACCGCTTTATGGAAGTGCGTGACGATGTGCTAAAA 2433
BSNT_02548___ 2434 GCATTAGAAACTGCGCGAAATGAAAAAATTATCGGTAAATCTTTGGAAGC 2483
||..|.||||.|||.||.|||||.|||.|.|||||....|||.|.|||||
BPUM_1442___i 2434 GCGCTCGAAATTGCACGTAATGAGAAAGTGATCGGACGTTCTCTTGAAGC 2483
BSNT_02548___ 2484 AAACCTGAAATTGTATCCAAACA-AAGAA---AACAAGGAGCTCT--TGG 2527
||...|||...|.|||.| .||| ||||| ||.|| ||| |.|
BPUM_1442___i 2484 AAGTGTGACCCTTTATGC-GACAGAAGAAGTGAAAAA-----TCTTCTTG 2527
BSNT_02548___ 2528 CTTCCATAAAAGAAAACCTTTCT----CAGCTGTTTATTGTGTCTGAACT 2573
|.|||||.||||||.| |.| |||||.|||||..|.||||
BPUM_1442___i 2528 CATCCATTAAAGAAGA----TGTGAAGCAGCTCTTTATCATCTCTG---- 2569
BSNT_02548___ 2574 GATAATCAGC-GAAGAAAATGATGCGCCGAACG-------ATGCGC---- 2611
|||.|.| |.|||| |||||||..||.| ||.|||
BPUM_1442___i 2570 ---AATTAACGGTAGAA---GATGCGCAAAATGCTGACACATCCGCACCT 2613
BSNT_02548___ 2612 ----AAAGTTTTGCGACGGGTAAAATCGCTGTCGAGAAAGCGGAAGGCGA 2657
|.|.|| |.||.|.|||.|..||..|.|||||.|||||.||
BPUM_1442___i 2614 GAATACACTT------CAGGAAGAATTGTGGTTCAAAAAGCAGAAGGAGA 2657
BSNT_02548___ 2658 AATGTGTGAGAGATCACGTGTGATTTCAAAAGATGTAGGTGCAAACCCGA 2707
|.|.||.||..|.||.|||.|.|||||.||||||||.||||||||.||||
BPUM_1442___i 2658 ACTATGCGAACGTTCTCGTATTATTTCTAAAGATGTTGGTGCAAATCCGA 2707
BSNT_02548___ 2708 AATATCCTACACTTTCATTACGCAACGCTGAAATCGTTGAAAAATACTAT 2757
||||.||.|||.|.|||.|....||.|||||||||||.||||||||.||.
BPUM_1442___i 2708 AATACCCAACATTGTCACTGAAAAATGCTGAAATCGTGGAAAAATATTAC 2757
BSNT_02548___ 2758 CAAAAATAA 2766
||.||.|||
BPUM_1442___i 2758 CAGAATTAA 2766
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