Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_02544 and BPUM_1440

See Amino acid alignment / Visit BSNT_02544 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_02544___ylmH.1.24716.seq
#    -bsequence dna-align/BPUM_1440___ylmH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02544___ylmH-BPUM_1440___ylmH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02544___ylmH-BPUM_1440___ylmH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02544___ylmH
# 2: BPUM_1440___ylmH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 834
# Identity:     522/834 (62.6%)
# Similarity:   522/834 (62.6%)
# Gaps:         117/834 (14.0%)
# Score: 1498.0
# 
#
#=======================================

BSNT_02544___      1 ATGAGCGATATATATCAGCACTTCAGAAAAGACGAGCGGGCCTTTATTGA     50
                     |||||||||||.|||||.||.||.||||||||.||.|.|.|.|||.|.||
BPUM_1440___y      1 ATGAGCGATATTTATCAACATTTTAGAAAAGATGAACAGCCATTTGTCGA     50

BSNT_02544___     51 TCAGGCGCTCGAATGGAAAAGAATTGTCCAGGAGCAGTACCGGATGAAGC    100
                     .||.|.|.|.|..|||||||.|||.|..|..||.|||||.||..||||..
BPUM_1440___y     51 CCAAGTGTTAGGCTGGAAAAAAATCGCACTCGACCAGTATCGATTGAAAT    100

BSNT_02544___    101 TGACCGACTTTTTAGACCCCCGAGAGCAG---------------GTCATC    135
                     |.||.||||||.|.||.||.||.||||||               ||||||
BPUM_1440___y    101 TAACAGACTTTCTTGATCCGCGTGAGCAGTTTATTACCCAGTCCGTCATC    150

BSNT_02544___    136 CTCTCTGCTGTTACGGGA-CAGGCAGATGTCGGGCTTG------CCTTTT    178
                     |                | ||.||.|||   |.|||||      ..||||
BPUM_1440___y    151 C----------------AGCATGCTGAT---GAGCTTGGAATCATGTTTT    181

BSNT_02544___    179 CCGGCGGCTATGACAGAGCGGAGCGAAAACGGGCGATTCTGTATCCAGAG    228
                     ..|||||.|||||..||||||||||.|||.|.|||.|..|.|||||.||.
BPUM_1440___y    182 TTGGCGGGTATGAAGGAGCGGAGCGGAAAAGAGCGCTCATTTATCCTGAA    231

BSNT_02544___    229 TACAT---------TACTCCGGAAG------TATCAGATTTTGAACTTCA    263
                     ||..|         |||||.|||.|      |.||..|||      ||||
BPUM_1440___y    232 TATTTAGAACCGGCTACTCAGGATGCTGAGCTGTCTTATT------TTCA    275

BSNT_02544___    264 GGCGTTTAACGTTTGTTATGCTGACAAGTTTGTCTCAGTAGATCATC---    310
                     ||   |.|||      |||||..|.||||||.|.||..||||.||.|   
BPUM_1440___y    276 GG---TGAAC------TATGCGAAAAAGTTTATTTCGTTAGAACACCCGA    316

BSNT_02544___    311 -GTTCTCTGCTTGGTGCATTAATGGGCATAGGATTAAAGCGGCAAAAATT    359
                      |    ||.||||||.||.|.||.||.|..||.||.|||||.||||||||
BPUM_1440___y    317 AG----CTCCTTGGTTCACTGATTGGGACGGGCTTGAAGCGTCAAAAATT    362

BSNT_02544___    360 CGGTGACATCGTGTTTTCTGAGACAGCAGTGCAATTGA-TTGTCTCAGCC    408
                     .||.||..|..|.|||||.|||..||..|||||.||.| ||||...|| .
BPUM_1440___y    363 TGGAGATCTGTTATTTTCAGAGGAAGATGTGCAGTTTATTTGTACGAG-T    411

BSNT_02544___    409 GATACCGCTGATTTTGTGGCTGCACAGCTGACCCAAGCAGGCAAAGCGGC    458
                     |||...||.||||||||...|||.||||||||.||.|..||||.|||..|
BPUM_1440___y    412 GATGTTGCCGATTTTGTTCGTGCGCAGCTGACGCATGTCGGCAGAGCCTC    461

BSNT_02544___    459 GG--TCAGCCTAGAGAAAATCGAC-TTGTCAGACCTTAACATTCCAGCAG    505
                     .|  |||  .|||||.||||| || ..|.|||| |||||      |||.|
BPUM_1440___y    462 CGTTTCA--TTAGAGGAAATC-ACGCAGGCAGA-CTTAA------AGCCG    501

BSNT_02544___    506 TTGAT--GT-----CGAAATAAGAGATGACACGGTTTCTTCTTTAAGGCT    548
                     .|.||  ||     .||.||.|.|||.||.|||.|||||||..|..||||
BPUM_1440___y    502 GTTATCAGTAAGACTGACATCAAAGAAGATACGATTTCTTCACTGCGGCT    551

BSNT_02544___    549 TGACGCCGTCTGCGCCTCTATGAGCAGGCAATCCCGCCAGAAATCACAGA    598
                     |||.||.||.||.||..|.||.|||.|.||.||.||.||.||..|||| |
BPUM_1440___y    552 TGATGCGGTATGTGCTGCAATCAGCCGTCAGTCTCGGCAAAAGGCACA-A    600

BSNT_02544___    599 CGCTT-GTGAAAAACGGCCTTGTGAAAGTGAACTGGAAGGTGGTTGAAGA    647
                     |..|| ||.|||||.||.|||||.|||||.||||||||.||...|||.||
BPUM_1440___y    601 CTTTTGGTTAAAAATGGGCTTGTTAAAGTTAACTGGAAAGTCACTGAGGA    650

BSNT_02544___    648 TCCTTCATACATAGTCGCGGAAGGGGA-CATGCTGTCAATCAGAGGTTTT    696
                     .|||||.|..|.|.|||..|||||.|| || |||.||..||||.||.|||
BPUM_1440___y    651 CCCTTCCTTTACAATCGGTGAAGGCGATCA-GCTCTCTGTCAGGGGATTT    699

BSNT_02544___    697 GGCCGGTGCAGCTTAACAAAA--ATCGAAGGAAAAACCAAAAAAGACAAA    744
                     |||||.|..|||.|  |||||  ||.||.||.||.|||||||||||.|||
BPUM_1440___y    700 GGCCGCTTTAGCCT--CAAAACGATTGATGGGAAGACCAAAAAAGATAAA    747

BSNT_02544___    745 TGGAGAGTTACGTTTGAAC----GACAAAAATAG    774
                     |..|.|||.||.|||||.|    ||||.||    
BPUM_1440___y    748 TTTAAAGTAACATTTGAGCTTCTGACATAA----    777


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02544 and BPUM_1440

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
