Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02533 and BPUM_1434

See Amino acid alignment / Visit BSNT_02533 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence dna-align/BSNT_02533___ylmA.1.24716.seq
#    -bsequence dna-align/BPUM_1434___ylmA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02533___ylmA-BPUM_1434___ylmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02533___ylmA-BPUM_1434___ylmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02533___ylmA
# 2: BPUM_1434___ylmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity:     541/848 (63.8%)
# Similarity:   541/848 (63.8%)
# Gaps:         121/848 (14.3%)
# Score: 1627.0
# 
#
#=======================================

BSNT_02533___      1 ATGATTTTGCAGCTTG------ACAATGTCTCACTAAAACGGAATGGGAA     44
                     |||.|.|  || ||||      |.|||||.||..|||||||.|||||.||
BPUM_1434___y      1 ATGGTGT--CA-CTTGAATTAAAGAATGTTTCTTTAAAACGAAATGGAAA     47

BSNT_02533___     45 ATGGATAC-TGAGAGATATTCATTGGAAGGTGGAAGAAA-AGGAAAATTG     92
                     ||||.|.| |.|| ..|.||.|.|||.|||| |||.||| ||||..|.||
BPUM_1434___y     48 ATGGTTGCTTCAG-TCTGTTGACTGGCAGGT-GAACAAAGAGGAGCACTG     95

BSNT_02533___     93 GGTGCTTTACGGCCTAAATGGCGCCGGGAAGACGGCGCTGTTAAATATGC    142
                     ||||||||||||..|||||||.||.|||||.||.||..|.||||||||||
BPUM_1434___y     96 GGTGCTTTACGGTTTAAATGGTGCGGGGAAAACCGCTTTATTAAATATGC    145

BSNT_02533___    143 TTTGCTCATATTATTTTCCAACATCAGGCGAGATGCAGGTGCTTGGCCAT    192
                     |.||||||||||||||.||.||||||||.||||||...|||||.||.|||
BPUM_1434___y    146 TCTGCTCATATTATTTCCCTACATCAGGTGAGATGACCGTGCTGGGGCAT    195

BSNT_02533___    193 GAATTTGGCAAAACAGAG---CTTGGGGAAAAGCTCA-GACGTAAAATTG    238
                     |..||||||||   .|||   |||||.|||||||||| ||.| |||||||
BPUM_1434___y    196 GTCTTTGGCAA---GGAGGCTCTTGGCGAAAAGCTCAGGAAG-AAAATTG    241

BSNT_02533___    239 GCCTCGTCTCAGCAGCTCTTCAGCAAAAATTGTATCCGGCA-----GATT    283
                     |||||.|.||.||||..|||.|..|.|||.||.|     ||     |||.
BPUM_1434___y    242 GCCTCATTTCTGCAGGACTTGAAAAGAAACTGCA-----CAGAGACGATA    286

BSNT_02533___    284 CAGCCTTTGAAATTGCTTTGAGCGGAGCTTACGCTTCGATTGGGTTATAT    333
                     ..||.||||||||||...|.|||||.||.|..||.||.|||||..|.||.
BPUM_1434___y    287 ATGCATTTGAAATTGTGCTCAGCGGGGCATTTGCCTCCATTGGACTCTAC    336

BSNT_02533___    334 GAAACGCCAAGTAAGGAAACCAGGGAAAAAGCGATTGGTTTGTTAGAGGA    383
                     |||||.||.|...|.||.|..||.||||||||.||||.|.|.|||.|   
BPUM_1434___y    337 GAAACCCCGACAGATGAGATAAGAGAAAAAGCCATTGATCTATTAAA---    383

BSNT_02533___    384 CTTGGGAGCAATTG---------AATATGCCGATCGTCGCTATGAAACCC    424
                           ||||.|||         |||||||..|.||....||||||||.|
BPUM_1434___y    384 ------AGCATTTGGTTCGTTCAAATATGCGAACCGGACATATGAAACAC    427

BSNT_02533___    425 TTTCTCAAGGGGAAAAACAAAGAGCGTTGATTGCTAGAGCACTAATGGCC    474
                     |.||.|||||.|||||.||.|.||...|||||||.|||||..|||||...
BPUM_1434___y    428 TCTCACAAGGAGAAAAGCAGAAAGTCCTGATTGCGAGAGCTTTAATGAAT    477

BSNT_02533___    475 GATCCGGAGTTGCTGATACTGGATGAACCAGTCACAGGGCTGGATTTTAT    524
                     |||||..||.|.|||||..|||||||.||.||.||.||.||.||||||.|
BPUM_1434___y    478 GATCCTAAGCTCCTGATTTTGGATGAGCCTGTGACGGGTCTTGATTTTTT    527

BSNT_02533___    525 TGCCCGGGAAAAGTTGTTAGATACGATTACATACATTGCAAACAAAG-AA    573
                     .||..|.|||.||.||.||||.||.||..|||.|||||| |.||||| ..
BPUM_1434___y    528 AGCAAGAGAACAGGTGCTAGAGACCATCTCATTCATTGC-ATCAAAGCCT    576

BSNT_02533___    574 AATGCACCATCTATCCTTTATGTGACTCATCATGCTGAAGAAATTCTGCC    623
                     .||||.||..|.||.|||||...|||.||||||||.|||||.|||.||||
BPUM_1434___y    577 GATGCGCCTACGATGCTTTACACGACCCATCATGCAGAAGAGATTTTGCC    626

BSNT_02533___    624 TGTCTTTGATAAAGCCCTT--TTATTAAAACAGGGAGAGGTCTTTGGATC    671
                     .||.|||.|..|  |.|||  |||||||||.|.|||...|| |||.||||
BPUM_1434___y    627 CGTTTTTCAGCA--CACTTTATTATTAAAAAATGGATCTGT-TTTTGATC    673

BSNT_02533___    672 --CGGAGAAATAAAGGAAATGCTTACTGATCAAG-----TACTTTCCGCT    714
                       .||| |||.|||.||.|||.|.|     ||||     |.|||||..|.
BPUM_1434___y    674 AAGGGA-AAACAAAAGAGATGATGA-----CAAGCGATTTGCTTTCTTCC    717

BSNT_02533___    715 TTTTTTGA---TACGCCAATCCATGTATTATGGAATCAGGATCGGCCGT-    760
                     ||.|||||   |.||   .|..||||..|.|||    ||.|..|||||| 
BPUM_1434___y    718 TTCTTTGAATGTGCG---GTAGATGTGATGTGG----AGAAATGGCCGTC    760

BSNT_02533___    761 -----TTTTAACAAG--------AGCTGAGCCGATAACGAATGCCTGA    795
                          ||     |||        ||                       
BPUM_1434___y    761 CTCACTT-----AAGTAAATTGTAG-----------------------    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02533 and BPUM_1434

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
