Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02530 and BPUM_1425
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_02530___spoIIGA.1.24716.seq
# -bsequence dna-align/BPUM_1425___spoIIGA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02530___spoIIGA-BPUM_1425___spoIIGA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02530___spoIIGA-BPUM_1425___spoIIGA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02530___spoIIGA
# 2: BPUM_1425___spoIIGA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 999
# Identity: 646/999 (64.7%)
# Similarity: 646/999 (64.7%)
# Gaps: 138/999 (13.8%)
# Score: 1883.0
#
#
#=======================================
BSNT_02530___ 1 GTGAAAATCTATTTAGATGTCATTTGGCTGTTAAACTTTTGTTTTGATGC 50
|||...||.|||||||||||.|||||||||||||||||||||||||||
BPUM_1425___s 1 GTGGTCATTTATTTAGATGTGATTTGGCTGTTAAACTTTTGTTTTGAT-- 48
BSNT_02530___ 51 ACTTTTGCTT---TTGCTCACGGCATTTATTTTAAAACGGCATGTAAAAA 97
||.|||||| ||.|||||.|||||||||.|.|||||.||.|||||||
BPUM_1425___s 49 -CTATTGCTTCTCTTACTCACTGCATTTATTCTCAAACGACAAGTAAAAA 97
BSNT_02530___ 98 AAAGAAGA---CTGGTAGGCGGAGCGTTCATCGGTTCCAGTATTGTCCTT 144
||||..|| .||.|| |||||..||||.||.||.||.|||||.||.
BPUM_1425___s 98 AAAGGCGATATATGTTA---GGAGCTCTCATTGGATCGAGCATTGTTCTC 144
BSNT_02530___ 145 TTGATGTTTACTCCTTTTTCGCCGATTGTTGAACATCC----GGCTGGGA 190
|||.|.|||||.||.|||.|...|.||||...|||.|| ||| |
BPUM_1425___s 145 TTGCTCTTTACACCATTTGCAATGGTTGTGTCACACCCTTTAGGC----A 190
BSNT_02530___ 191 AGCTAGCTTTTTCAGTTGTGATTGTGGTGGTGACATTTGGCTTTAAAAGA 240
|.|||..||||||..|..|.||.||..|.|..||.|||||.|||.|||||
BPUM_1425___s 191 AACTACTTTTTTCTATCTTCATCGTTCTTGCAACCTTTGGTTTTCAAAGA 240
BSNT_02530___ 241 TTTCGGTTTTTCTTTCAAAATTTGTTTTCCTTTTATTTTGCCACTTTTTT 290
|||||.|..||.|||||||||.|||||.|.|||||.||||..||.|||||
BPUM_1425___s 241 TTTCGTTCCTTTTTTCAAAATCTGTTTGCTTTTTACTTTGTAACATTTTT 290
BSNT_02530___ 291 AATGGGGGGAGGAATTATCGGAGCCCATTCTTTGCTGCAGTCAAATTCTA 340
.|||||.|||||.||.|||||.|..|||||.||..||||..|.|||.| |
BPUM_1425___s 291 GATGGGAGGAGGCATGATCGGGGTTCATTCATTTTTGCAAACCAATAC-A 339
BSNT_02530___ 341 TTG-TTCAAAACGGTGTCATGATTACCAATCAAACA-----GGGTTTGGA 384
.|| |||||||.|||.|..||||| |||.|.| ||.|||||.
BPUM_1425___s 340 GTGATTCAAAATGGTCTGCTGATT-----TCACAAAATGATGGCTTTGGT 384
BSNT_02530___ 385 GACCCGATCAGCTGGTTGTTTATTGTTGCTGGCTTTCCAGCATTATGGTT 434
||.||.||.||||||.|.|||.||.|..||||.|||||.|||.|.|||.|
BPUM_1425___s 385 GATCCAATTAGCTGGCTTTTTGTTTTAACTGGGTTTCCTGCAATTTGGCT 434
BSNT_02530___ 435 TTTTTCTAAAAGAAGAATTGAAGATATTGAAACAAAAAACATTCAATATG 484
.|||||.||.|.||||.|.|.|||..|||..||.|||||.|..|||||||
BPUM_1425___s 435 GTTTTCAAAGAAAAGATTAGGAGAGGTTGGTACGAAAAAAAGACAATATG 484
BSNT_02530___ 485 AGGAACGAGTCAGCGTGCAGG-----CAGATTTGGGCAGCCAAACACTTC 529
|.||||.||| ||.|| .|| ||.|||...|.|| |.||..|||
BPUM_1425___s 485 ATGAACAAGT--GCTTG-TGGAACTACACATTCACGGAG--AGACCATTC 529
BSNT_02530___ 530 ATGTCAGAGGCCTGATTGATTCCGGTAATCAGCTGTACGATCCTCTTACA 579
.|.|.|..||.||..|||||||.||.||.||||||||.||||||.|.||.
BPUM_1425___s 530 GTTTAAAGGGACTCGTTGATTCTGGCAACCAGCTGTATGATCCTATGACC 579
BSNT_02530___ 580 AAAACACCGGTAATGATCATTTA-------CAT-TGATAAACTGGAGCCG 621
|||||||||||.||||||.|..| ||| | ||| |.|.
BPUM_1425___s 580 AAAACACCGGTTATGATCGTCCAGGCCGACCATCT----AAC----GGCC 621
BSNT_02530___ 622 ATTTTCGGAACAGCCGAAACGATGA------TCATTCGAAACACAGACCC 665
||||.|||| |||.||.|.| |||| ||| ||||.|.|
BPUM_1425___s 622 ATTTGCGGA------GAATCGTTTATAGACCTCAT--GAA--ACAGTCTC 661
BSNT_02530___ 666 AT----TGGAAGCCATCGAACAGCTCGATGA-----TTCCTTTCGCTTTT 706
|| |.||||.|||..||.||.||||||| ||||| |||.|
BPUM_1425___s 662 ATCCTGTTGAAGTCATGCAAAAGATCGATGATCAATTTCCT----CTTCT 707
BSNT_02530___ 707 TAGATAAAATGAG-GTTGATTCCATACAGGGGAGTTGGTCA-GCAAAATC 754
| |||..|.|.|| .||| |||||||..|.|.|||.||||| | |||
BPUM_1425___s 708 T-GATCGATTAAGACTTG-TTCCATATCGAGCAGTCGGTCATG----ATC 751
BSNT_02530___ 755 A---ATTTTTATTATGCGTTAAACCGGATCAC-GTAACGATTATGACA-- 798
| .|||.||.|||||.|.|||||.||| || || ||.||
BPUM_1425___s 752 ACGGCTTTCTACTATGCCTAAAACCAGAT-ACAGT--------TGTCATT 792
BSNT_02530___ 799 -----AAAGAAG-AAATGATCTCTG-CAGATAAATGTTTAATCGGCATCA 841
|||||.| |.||||| ||.| |||.|||.|||||..|.||..|.|
BPUM_1425___s 793 TATTCAAAGACGCATATGAT-TCAGCCAGCTAAGTGTTTTGTAGGGTTGA 841
BSNT_02530___ 842 GCACAACAAAGC----TGTCGGCAGATGGAGAGTTTGACGCGATTATTCA 887
| .|..||| |.|||||||||...||.|||.|..|.||.|||||
BPUM_1425___s 842 G----TCTGAGCGGCTTATCGGCAGATCAGGAATTTCAATCCATCATTCA 887
BSNT_02530___ 888 TCCGAAAATGCTTT---CGGGCAAGGCTGTCAAACA---CGTTTCATAA 930
|||..|.||| || ||||.|| .|||..|| .||.||.||.
BPUM_1425___s 888 TCCAGATATG--TTAGACGGGAAA----ATCATCCAGGGGGTGTCGTAG 930
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