Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02519 and BPUM_1417

See Amino acid alignment / Visit BSNT_02519 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_02519___divIB.1.24716.seq
#    -bsequence dna-align/BPUM_1417___divIB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02519___divIB-BPUM_1417___divIB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02519___divIB-BPUM_1417___divIB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02519___divIB
# 2: BPUM_1417___divIB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     530/847 (62.6%)
# Similarity:   530/847 (62.6%)
# Gaps:         122/847 (14.4%)
# Score: 1533.5
# 
#
#=======================================

BSNT_02519___      1 ATGAACCCGGGTCAAGACCGAGAAAAAATCGTTAACATTGAAGAGCGGAT     50
                     |||...||.|.|||.||....|||||.|||||.||.||.||||||||.||
BPUM_1417___d      1 ATGCGGCCTGATCATGAAAATGAAAAGATCGTCAATATAGAAGAGCGAAT     50

BSNT_02519___     51 CCCTAAAATTAAAGAGCAGAGGAAACAAAAGGCAAACCGCCGTCTCATTT    100
                     .||||||||||||||.||.|||||.|||||.||.|||||..|.||.||.|
BPUM_1417___d     51 TCCTAAAATTAAAGAACAAAGGAAGCAAAAAGCGAACCGGAGACTGATCT    100

BSNT_02519___    101 CATTTATTATGCTCTTTTTTATTATGGTGCTGATCATTGTGTACCTGCAA    150
                     |.|||||..|.||.||||||||.|||||..|.||||||.|.||..||||.
BPUM_1417___d    101 CTTTTATACTACTGTTTTTTATCATGGTTTTAATCATTATTTATTTGCAG    150

BSNT_02519___    151 ACACCAATCAGTAAAGTATC------AACAATCTCTGTTACAGGGAATGA    194
                     |||||.|||||.||..||||      |||.|||      |||||.||.||
BPUM_1417___d    151 ACACCTATCAGCAAGATATCTTCATTAACCATC------ACAGGTAACGA    194

BSNT_02519___    195 AAATGTATCAAAAAAGGAAATTATCGACCTTTCCGATATTAACAG-CGGA    243
                     |.||||.||.|.|||..|..||.|..|.|||||..|.||||| || .||.
BPUM_1417___d    195 ACATGTCTCTACAAAACAGCTTGTTAAACTTTCACAAATTAA-AGAAGGC    243

BSNT_02519___    244 GATACTGAGTTTTGGAGTTTGGACAAGCAAAAAACAGAAAAGAAGATTCA    293
                     ||.||.||||||||||.|||..|.||..|.|.|||||.|.|..|.|||.|
BPUM_1417___d    244 GAAACAGAGTTTTGGAATTTAAATAAAGATACAACAGCAGATCATATTAA    293

BSNT_02519___    294 GCAAAATAAATTAGTGA-AAAAAGCGGAGATCAG---CAAA-------TC    332
                     .||||||||   |.||| .|||||.|    ||||   ||||       ||
BPUM_1417___d    294 ACAAAATAA---ACTGATTAAAAGTG----TCAGTATCAAAAAACATTTC    336

BSNT_02519___    333 GCTGCCTAATAAAATCAACATTGCAATCGAAGAATAT--AAAGCGATTGC    380
                         ||.||||||.|.|..|||||..||.||||||||  |||  .|||||
BPUM_1417___d    337 ----CCAAATAAAGTGAGTATTGCTGTCAAAGAATATGCAAA--TATTGC    380

BSNT_02519___    381 TTATTTAGAAAAAGACGATGTGTACTATGAAGTGCTTGAAAACGGCTCAG    430
                     .|||.|..||||.|...||.|.||.|||||..|.||||||||.||..|.|
BPUM_1417___d    381 GTATCTTCAAAAGGGAAATCTATATTATGAGCTTCTTGAAAATGGGACCG    430

BSNT_02519___    431 TTCTGCCAAACGAAGTAACGCCGGATGATGCCGGACCGATTTTAGT-GAA    479
                     ...|.|||.|.|||||.||.|||..|.||||.|||||.|||||.|| ||.
BPUM_1417___d    431 CATTACCAGAAGAAGTGACACCGAGTCATGCAGGACCTATTTTTGTCGAT    480

BSNT_02519___    480 TTGGACA--AACGCGAAG-------AAGCGGT-----------CTCAAAT    509
                     |.|||||  ||.|.||||       ||.||||           .||||.|
BPUM_1417___d    481 TGGGACAATAAGGAGAAGCTGAAGCAAACGGTTAAATCTTTAAATCAACT    530

BSNT_02519___    510 GGCCAAGCAGCTCGATGCGTTGTCA--AAGTCGTTAAAACAGTCGATTTC    557
                     |  |.|||  |||.||      |||  ||.||             ||.||
BPUM_1417___d    531 G--CCAGC--CTCTAT------TCAGGAACTC-------------ATCTC    557

BSNT_02519___    558 AGAAATTTATTATACGCCTGTAAAAATGGATGAAAACCGT-----ATTAA    602
                     ||||.||||||||..|||  .|.||||   |.|||...||     .||||
BPUM_1417___d    558 AGAAGTTTATTATGTGCC--GACAAAT---TCAAACAAGTGGTTAGTTAA    602

BSNT_02519___    603 GTTGTACATGAACGACGGTTATGTTGTTACGGCATCTATTAAAACGTTTG    652
                     .||.||.|||||.|||||..|...|||.|..||.||.||||||||.||.|
BPUM_1417___d    603 ATTTTATATGAATGACGGAAACACTGTGATTGCTTCAATTAAAACATTCG    652

BSNT_02519___    653 CAGACCGAATGAAGACGTATCCTTCTATCATCTCACAGCTAAG-------    695
                     ..||...||||||.||.|||||..|.||  |.|.|.||   ||       
BPUM_1417___d    653 GTGATAAAATGAAAACCTATCCAGCCAT--TGTTAAAG---AGCTTTCGT    697

BSNT_02519___    696 CAGCAATAAAAAAGGAATCATTCATTTAGAAGTTGCCACCTATTTTGAAG    745
                     ||.|  |.|||||||.|..||||||.|.|||||.||.||.|||||.||||
BPUM_1417___d    698 CATC--TGAAAAAGGCACAATTCATATGGAAGTCGCTACGTATTTCGAAG    745

BSNT_02519___    746 AGTTTGGAAAAAACGATAAAGCTGCTAAAAAGGAAGATGAAAATTGA    792
                     .|||            ||||.||...||||||||.|||||...||||
BPUM_1417___d    746 CGTT------------TAAATCTAAGAAAAAGGATGATGAGCGTTGA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02519 and BPUM_1417

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
