Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02516 and BPUM_1416

See Amino acid alignment / Visit BSNT_02516 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_02516___murB.1.24716.seq
#    -bsequence dna-align/BPUM_1416___murB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02516___murB-BPUM_1416___murB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02516___murB-BPUM_1416___murB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02516___murB
# 2: BPUM_1416___murB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity:     661/931 (71.0%)
# Similarity:   661/931 (71.0%)
# Gaps:          38/931 ( 4.1%)
# Score: 2158.5
# 
#
#=======================================

BSNT_02516___      1 ATGGAGAAAGTGATACAGGAATTAAAAGAACGCG-AAGTCGGCAAGGTTC     49
                     ||||||||..|||...|.||||||..|||| ||| ||||.||.||.||.|
BPUM_1416___m      1 ATGGAGAACTTGAAGAATGAATTATTAGAA-GCGCAAGTTGGTAAAGTAC     49

BSNT_02516___     50 TTGCAAATGAACCGCTCGCGAATCATACAACGATGAAAATCGGCGGACCT     99
                     |||.|||.||.|||||.||||||||||||||.||||||||.||||||||.
BPUM_1416___m     50 TTGAAAACGAGCCGCTTGCGAATCATACAACAATGAAAATAGGCGGACCA     99

BSNT_02516___    100 GCGGATGTATTGGTCATTCCAAGCAG-TGTAGATGCTGTTAAAGAC-ATC    147
                     ||.|||.|.|||.||||.|||| .|| |.|.|||||.||.||| || |||
BPUM_1416___m    100 GCAGATCTTTTGATCATCCCAA-AAGATATCGATGCAGTGAAA-ACGATC    147

BSNT_02516___    148 ATGGA-CGTGATTAAAAAATATGATGTGAAGTGGACAGTCATCGGCCGCG    196
                     ||||| |.|| |.||||||.|..|...|||.|||||.||.||.||..|.|
BPUM_1416___m    148 ATGGATCATG-TGAAAAAACACCAGACGAATTGGACGGTTATTGGAAGAG    196

BSNT_02516___    197 GATCAAATCTTCTTGTTTTAGATGAAGGAATTAGAGGCGTAGTGATCAAG    246
                     |.||.|||.|.|||||..|.|||.||||||||.||||.||.||..|.|||
BPUM_1416___m    197 GTTCGAATTTACTTGTACTCGATAAAGGAATTCGAGGAGTTGTCCTAAAG    246

BSNT_02516___    247 CTGGGTGCGGGTCTTGACCATTTGGAGCTTGAA--GGGGAACAAGTAACA    294
                     ||||||.|.||.||.||.||..|  |.||..||  |..|||.||.|.|||
BPUM_1416___m    247 CTGGGTACTGGACTGGATCACCT--AACTGTAAATGATGAAGAAATTACA    294

BSNT_02516___    295 GTCGGAGGCGGTTATTCAGTGGTCCGCCTTGCTACATCATTGAGCAAAAA    344
                     |||||.||.|||||.||.||.||..|.||.||.|||||..|.||.|||.|
BPUM_1416___m    295 GTCGGCGGTGGTTACTCTGTTGTAAGGCTCGCAACATCGCTTAGTAAACA    344

BSNT_02516___    345 AGGCCTGTCCGGTTTGGAATTTGCTGCCGGCATTCCAGGATCAGTCGGCG    394
                     .||.||.||.||..||||||||||.||.||.|||||.||.||..|.||||
BPUM_1416___m    345 GGGTCTTTCAGGCCTGGAATTTGCAGCTGGTATTCCGGGGTCTATTGGCG    394

BSNT_02516___    395 GAGCGGTTTATATGAATGCCGGCGCTCACGGTTCTGATATGAGCGAGATT    444
                     |.||.|||||||||||.||.||.||.||.||.||||||||.||..|.|||
BPUM_1416___m    395 GCGCTGTTTATATGAACGCAGGTGCACATGGATCTGATATCAGTAAAATT    444

BSNT_02516___    445 CTCGTCAAAGCGCATATTTTATTTGAAGACGGAACGATTGAGTGGCTGAC    494
                     ||.||.|||||....||.||||||||||||||||..||.||||||||.||
BPUM_1416___m    445 CTTGTGAAAGCTAGAATCTTATTTGAAGACGGAAGTATCGAGTGGCTTAC    494

BSNT_02516___    495 AAATGAGCAGATGGATTTCAGCTACAGGACATCTGTACTGCAAAAGAAAC    544
                     ||||||.||.|||.||||.|||||..|.||.||.||.||.||||||.|||
BPUM_1416___m    495 AAATGAACAAATGAATTTTAGCTATCGAACGTCAGTCCTTCAAAAGGAAC    544

BSNT_02516___    545 GCCCGGGCGTTTGCCTTGAAGCTGTTTTGCAGCTGGAGCAGAAGGATAA-    593
                     |.||.|||.||...||.||||||||.||..||||..|||   |||||.| 
BPUM_1416___m    545 GACCTGGCATTGTTCTCGAAGCTGTGTTTAAGCTCAAGC---AGGATGAC    591

BSNT_02516___    594 ----GGAATCAATCGTTCAGCAAATGCAAAGCAATAAAGACTATAGAAAA    639
                         .|||  ||||....||.|.||||||...||||||||.|||.|.|||
BPUM_1416___m    592 CGCGAGAA--AATCACAAAGAAGATGCAACAAAATAAAGATTATCGTAAA    639

BSNT_02516___    640 AATACACAGCCGTATTCAA--GCCCTTGTGCGGGAAGCATATTCAGAAAT    687
                     .|.||.|||||.|||  ||  |.||.|||||.||.||.||.||..|||||
BPUM_1416___m    640 GAAACCCAGCCTTAT--AATCGGCCATGTGCTGGCAGTATTTTTCGAAAT    687

BSNT_02516___    688 CCGCTTCC-GAATCATGCCGGGAACCTTGTAGAAAAAGCAGGCTTGAAAG    736
                     |||||.|| |||| ||||.||..|.||||||||||||||....||.||||
BPUM_1416___m    688 CCGCTGCCTGAAT-ATGCAGGACAGCTTGTAGAAAAAGCGAATTTAAAAG    736

BSNT_02516___    737 GATATCAAATCGGCGGTGCAAAGATATCGGAGATGCACGGAAACTTCATC    786
                     ||||.|||.|||||||.||.|..||.||.||.||||||||||||||.||.
BPUM_1416___m    737 GATACCAACTCGGCGGAGCTAGAATTTCTGATATGCACGGAAACTTTATT    786

BSNT_02516___    787 GTCAATGCGGGAGGAGCATCAGCAAAAGATGTGCTTGATCTCATTGACCA    836
                     |||||.||.||.|||||..|.||..||||.||.||.||..|.|||   ||
BPUM_1416___m    787 GTCAACGCTGGTGGAGCCACTGCTCAAGACGTACTAGACTTAATT---CA    833

BSNT_02516___    837 TGTGA---AAAAGACAATCCGTGAAAAATACGAGATTGATATGCACACAG    883
                     ..|.|   ||||||.|||....|||.|.|||.|..|.||.|||||.||||
BPUM_1416___m    834 GTTCATCCAAAAGAAAATTAAAGAAGACTACAACGTAGAGATGCATACAG    883

BSNT_02516___    884 AGGTTGAAATCATCGGCG--GAAATCGCTGA    912
                     |.||.|||||.|||||.|  ||||  .||.|
BPUM_1416___m    884 AAGTAGAAATTATCGGTGAAGAAA--ACTAA    912


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02516 and BPUM_1416

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
