Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02502 and BPUM_1404
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:00
# Commandline: needle
# -asequence dna-align/BSNT_02502___ylbQ.1.24716.seq
# -bsequence dna-align/BPUM_1404___ylbQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02502___ylbQ-BPUM_1404___ylbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02502___ylbQ-BPUM_1404___ylbQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02502___ylbQ
# 2: BPUM_1404___ylbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity: 580/1016 (57.1%)
# Similarity: 580/1016 (57.1%)
# Gaps: 235/1016 (23.1%)
# Score: 1325.0
#
#
#=======================================
BSNT_02502___ 1 ATGAAAATTGGAATTATCGGCGGAGGCTCCG-TCGGTCTTTTATGCGCCT 49
.||||.||||||||.||.|||||.|| |.|| |.|||||..|.||.| ||
BPUM_1404___y 1 TTGAACATTGGAATCATTGGCGGCGG-TGCGATTGGTCTGCTCTGTG-CT 48
BSNT_02502___ 50 A-TTATTTGTCACTTTATCACGACGTGACTGTTGTGACGAGGCGGCAAGA 98
| ||||||..|.|..|||||.|||||.||.||..|.||.||..|..|.||
BPUM_1404___y 49 AGTTATTTAACGCAGTATCATGACGTCACAGTCTTTACAAGAAGAAACGA 98
BSNT_02502___ 99 ACAGGC--------TGCGGCCATTCGGT-CTGAAGGAATCCGGCTTTATA 139
|||||| |.||..|||||||| .|||..||| |..||.|
BPUM_1404___y 99 ACAGGCAGAAGAGATTCGAGCATTCGGTATTGAGCGAA-----CAGTAAA 143
BSNT_02502___ 140 AAGGCGGGGAGGAA---TTCAG--GGCTGAT--TGCAGTGCGGACACGAG 182
| ||||.|| ..||| |.|||.| |||| |..|||.||.
BPUM_1404___y 144 A------GGAGAAACATGCCAGGCGTCTGTTCATGCA---CAAACAGGAA 184
BSNT_02502___ 183 TATCAATTCG--GACTTTGACCTGCTTGTCGTAACAGTGAAGCAGCATCA 230
||.|| | ||.|||||..||||..||||.||||||||..|.|||||
BPUM_1404___y 185 TAACA----GGAGAATTTGATTTGCTCATCGTGACAGTGAAATATCATCA 230
BSNT_02502___ 231 GCTTCAGTCTGTTTTTTCGTCGCT---TGAACGGATCGGGAAGA------ 271
..|.||...||| ||| ||||| .||| ||.|
BPUM_1404___y 231 TTTGCAAGATGT---------GCTTAGTGAAC-TATC---AACATTATCT 267
BSNT_02502___ 272 ------CGAATATATTATTTTTGCAAAACGGCATGGGGCA--TATCCACG 313
|| |||.|||||.||.||.|||||.||||..|| |||
BPUM_1404___y 268 CCTCATCG--TATCTTATTCTTACAGAACGGAATGGCTCACTTAT----- 310
BSNT_02502___ 314 ACCTAAA-----AGACTGG---CACGTTGGCCATTCCATT-TATGTTGGA 354
||.| |||.|.| .||| ||.|||| |||| ||..|.||.
BPUM_1404___y 311 ---TAGATTTGGAGAATTGGAAAACG--GGACATT-CATTATACATAGGT 354
BSNT_02502___ 355 ATCGTTGAGCACGGAGCTGTAA-GAAAA--TCGGATACA-GCTGTTGATC 400
.|.||.||||||||||| || |||.| ||.||| || |..||..|.|
BPUM_1404___y 355 GTGGTAGAGCACGGAGC---AATGAAGATGTCAGAT-CATGAAGTGAACC 400
BSNT_02502___ 401 ATACAGGCCTAGGTGCGATAAAATGGAGCGCATTCGACGATGC-TGAACC 449
|||||||..|.|||...||.||.|||.|.|||||..| || ||||.|
BPUM_1404___y 401 ATACAGGTATCGGTATCATCAAGTGGGGGGCATTTCA----GCATGAAGC 446
BSNT_02502___ 450 AGACCGGCTG-------AACATCA-TGTTTCAG-CATAACCATTCGGATT 490
|| |.|||| ||.|.|| ||..|.|| ||| ||||| .|||
BPUM_1404___y 447 AG--CAGCTGATATAAAAAAAGCATTGAATGAGACAT---CATTC-CATT 490
BSNT_02502___ 491 TTCCGATTTATTATGAGACGGAT---TGGTACCGTCTGCTGACGGGCAAG 537
|||.|||....||| |.|||| |||.|....||||||..||..||.
BPUM_1404___y 491 TTCAGATGGTCTAT---ATGGATGAATGGAAAAAGCTGCTGCAGGAAAAA 537
BSNT_02502___ 538 CTGATTGTAAATGCGTGTATTAATCCTTTAACTGCGTTATTGCAGGTGAA 587
|||.||||.||||..|||||||||||..|.||..|.|||.||||.||||.
BPUM_1404___y 538 CTGCTTGTCAATGTCTGTATTAATCCGCTTACGACTTTACTGCATGTGAG 587
BSNT_02502___ 588 AAATGGAG----AACTGCTGACAACGCCAGCTTATCTGGCTT-TTATGAA 632
|||.||.| ||.| ||| .||| ||| .||||||
BPUM_1404___y 588 AAACGGGGCATTAATT-----CAA--------AATC---CTTCATATGAA 621
BSNT_02502___ 633 -----GCTG------GTATTTCAGGAGGCATGCAGCATTTTAAAACTTGA 671
|.|| |.||||.|.|| ||||.|||..|.|||||
BPUM_1404___y 622 TACATGATGAAATGTGCATTTGAAGA-------AGCAGTTTCTATCTTGA 664
BSNT_02502___ 672 ----AAACGAAGAAAAGGCTTGGGAGC------GGGTTCAGG------CC 705
|...|||.|| |||| |||.|.|.| |.
BPUM_1404___y 665 GCTTACCTGAAAAA---------GAGCGACTCTGGGCTTATGTCAATACT 705
BSNT_02502___ 706 GTTTGTG-GACAAACGAAAGAGAATCGTTCATCAATGCTGGTTGACGTCA 754
|||||.| || |.|||...|||||||..|||||.|||| ||.|.|..|
BPUM_1404___y 706 GTTTGCGAGA-ATACGGCTGAGAATCAATCATCTATGC---TTCAAGATA 751
BSNT_02502___ 755 TTG---GAGGCCGGCAGACGGAAGCTGACGCCATTATCGGATA-CTTATT 800
|.| .||||||.||.||.|||....|.||.||..|.||.|| ||| ||
BPUM_1404___y 752 TAGTAAAAGGCCGCCAAACCGAAAGAAAAGCTATCCTTGGCTATCTT-TT 800
BSNT_02502___ 801 ---GAAGG---AAGCAAGTCTTCAAGGTCTTGATGCCGT-CCAC------ 837
.|||| ||||| ||||| ||.|||.|| ||||
BPUM_1404___y 801 AAAAAAGGCTCAAGCA------CAAGG---TGTTGCGGTGCCACATCTCA 841
BSNT_02502___ 838 CTAGAGTTTTTATATGGCAGCATCAAAGCATTGGAGCGAAATA--CAAAC 885
|| ||.||..||.|.|||.|..|||.|||||| |||.| |||||
BPUM_1404___y 842 CT----TTCTTTGATCGAAGCTTGGAAGTATTGGA---AAAAAAGCAAAC 884
BSNT_02502___ 886 AAAGTCTTTTGA---- 897
|||.||||||||
BPUM_1404___y 885 AAAATCTTTTGAGTGA 900
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