Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02501 and BPUM_1403

See Amino acid alignment / Visit BSNT_02501 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_02501___ylbP.1.24716.seq
#    -bsequence dna-align/BPUM_1403___ylbP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02501___ylbP-BPUM_1403___ylbP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02501___ylbP-BPUM_1403___ylbP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02501___ylbP
# 2: BPUM_1403___ylbP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 488
# Identity:     361/488 (74.0%)
# Similarity:   361/488 (74.0%)
# Gaps:          13/488 ( 2.7%)
# Score: 1276.0
# 
#
#=======================================

BSNT_02501___      1 TTGACAAAGGTAGAACGTCTGCTTATCAACTATAAAACGCTGGAAGAATT     50
                     .||.||.|.|||.||||.||.||.||.||.||.|||||..|.||.|||||
BPUM_1403___y      1 ATGGCACAAGTAAAACGACTTCTAATTAATTACAAAACTTTAGAGGAATT     50

BSNT_02501___     51 CAAGAAATTCAAAGAATACGGCATTCAGGAGCTTTCAATGCTTGAAGAAC    100
                     .||..||||.||.|||||||||||.||.|||||.||.|||||||||||.|
BPUM_1403___y     51 TAAACAATTTAAGGAATACGGCATACAAGAGCTATCCATGCTTGAAGACC    100

BSNT_02501___    101 TTCAGGATAATATTATTGAAAATGACAGCACCTCGCCTTTTTACGGGATT    150
                     ||.|....|||||.||||||||.|||||||.|||.||.|||||.||||||
BPUM_1403___y    101 TTGAAAGCAATATGATTGAAAACGACAGCAACTCTCCATTTTATGGGATT    150

BSNT_02501___    151 TATTTTGGCGATAAACTTGTAGCACGAATGAGCCTGTATCAAGTTAACGG    200
                     ||||||||.|||||.||.||.|||||.||||||||.||||||||..|.||
BPUM_1403___y    151 TATTTTGGAGATAAGCTAGTGGCACGTATGAGCCTTTATCAAGTGGATGG    200

BSNT_02501___    201 CAAATCGAATCCCTATTTTGACAACCGCCAGGATTATTTGGAGCTGTGGA    250
                     |..|.|||...|.||||||.||.||..|||.||||||||.||||||||||
BPUM_1403___y    201 CTCAACGACAACGTATTTTAACCACAACCATGATTATTTAGAGCTGTGGA    250

BSNT_02501___    251 AGCTTGAGGTTCTTCCGGGCTACCAGAACAGGGGATACGG-GAGAGC-CT    298
                     ||||.||.||.|||||.||.||.|||..||..||.||||| || ||| ||
BPUM_1403___y    251 AGCTGGAAGTGCTTCCTGGGTATCAGCGCAAAGGGTACGGCGA-AGCACT    299

BSNT_02501___    299 TGGTTGAATTTGCAAAATCATTCAAAATGCCGATCCGGACAAATCCGAGA    348
                     | ||||||||.||.|||||.|||..|.||||.||.|||||.||||||.|.
BPUM_1403___y    300 T-GTTGAATTCGCTAAATCGTTCGGATTGCCAATTCGGACCAATCCGCGT    348

BSNT_02501___    349 ATGAAATCAGCGGAATTTTGGAACAAAATGAACTTTAAAACTGTTAAGTA    398
                     .|.|||||.||.|..||||||.|.||||||..||||.||.|.||.||.||
BPUM_1403___y    349 GTCAAATCTGCCGGTTTTTGGGATAAAATGGGCTTTGAATCAGTCAAATA    398

BSNT_02501___    399 TGATATGGCGCGGGACAAAGGGGAAAACCCGCTCATCTGGCATCCTG---    445
                     ||||||||.|||.||.||.||.|||||.||.|||||||||.|.||.|   
BPUM_1403___y    399 TGATATGGAGCGCGATAAGGGTGAAAATCCACTCATCTGGGAGCCCGCAC    448

BSNT_02501___    446 ATATGGATCACGAAATGACACCGGGAGAGTCTGCATAG    483
                     ||||   |||..|||..|||   ||.||.||.||.||.
BPUM_1403___y    449 ATAT---TCAAAAAAATACA---GGTGAATCCGCTTAA    480


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