Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02500 and BPUM_1402
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_02500___ylbO.1.24716.seq
# -bsequence dna-align/BPUM_1402___gerR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02500___ylbO-BPUM_1402___gerR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02500___ylbO-BPUM_1402___gerR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02500___ylbO
# 2: BPUM_1402___gerR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 397/616 (64.4%)
# Similarity: 397/616 (64.4%)
# Gaps: 110/616 (17.9%)
# Score: 1221.5
#
#
#=======================================
BSNT_02500___ 1 TTGACCATTACAAGACAAGATGCTTGGACTCAGGATGAGGATTTGCTGCT 50
|||||.||||||||.||.||.||.|||||.||||||||.|||||.||..|
BPUM_1402___g 1 TTGACGATTACAAGGCAGGACGCATGGACACAGGATGAAGATTTACTTTT 50
BSNT_02500___ 51 GGCAGAAGTGGTGCTT-CGTCATATTCGAGAGGGAGGAACACAGCTTTCA 99
.||||||||.|| ||| .|.||.||||||||.||||||||.||||||||.
BPUM_1402___g 51 AGCAGAAGTCGT-CTTAAGGCACATTCGAGATGGAGGAACGCAGCTTTCC 99
BSNT_02500___ 100 GCCTTTGAGGAGGTTGGGAGGGCGCTGACCAGAACCGCGGCAGCCTGTGG 149
||.||||||||.|||||.|.|||..||.|.||||||||||||||.||.||
BPUM_1402___g 100 GCATTTGAGGAAGTTGGTAAGGCATTGTCAAGAACCGCGGCAGCATGCGG 149
BSNT_02500___ 150 TTTCAGGTGGAACTCGTATGTGAGAAAACAATACCAGTCAGGTATAGAGC 199
||||||||||||.||.||.||||||||||||||.|||.||||.|||||.|
BPUM_1402___g 150 TTTCAGGTGGAATTCATACGTGAGAAAACAATATCAGGCAGGCATAGAAC 199
BSNT_02500___ 200 TTGCAAAAAAGCAAAGGAAAGAACTGAGAAAGCAAATCGGCGTTCATTC- 248
|.||||||||.||..||||||||.||.|.||..||||.||..|||||||
BPUM_1402___g 200 TGGCAAAAAAACAGCGGAAAGAATTGCGTAAAAAAATAGGGATTCATTCC 249
BSNT_02500___ 249 ---GGT------CAATATGCCGAATT--CCAT-GAAGCAGACTGCCTCAG 286
||| |||.|||| .|| |||| |||| ||| ||
BPUM_1402___g 250 TCTGGTTTACCACAACATGC---GTTAACCATAGAAG-AGA-------AG 288
BSNT_02500___ 287 -CATCGTCAGAAGGAAAACG----AGATTTGTCCATTCAGGATGTCATTC 331
||||.|| ||||| |||.|||.||.|||..||.||.||||
BPUM_1402___g 289 ACATCTTC-------AAACGAGGCAGAATTGACCCTTCGAGAAGTGATTC 331
BSNT_02500___ 332 AATTTCTCGAACA-ATTCAAAGAAGCACCGT-------CTGCACAAGAAT 373
|.|||.|.||.|| .||.||| |||.||| | ||||.| ||
BPUM_1402___g 332 AGTTTTTAGAGCAGCTTGAAA-AAGAACC-TGATGGACCTGCTC----AT 375
BSNT_02500___ 374 TTCAGCTTGAAAGGGAAAAATTGAAGGAGCAAATCCAATCGCTGCAAAAA 423
|| |.|.|||.||.|| |||.||.|| |.|||..||
BPUM_1402___g 376 TT--------ACGCGAAGAACTG-----GCAGATGCA----CAGCATCAA 408
BSNT_02500___ 424 GAGCTTGAGG--ATTTGCGGAGTGAAAATCAGACATT----GCGG-AATC 466
||.|.| |.||.|||| .||||||.| |||.| |||| |||
BPUM_1402___g 409 ----TTAAAGTCACTTACGGA-AGAAAATGA-ACACTTAAAGCGGCAAT- 451
BSNT_02500___ 467 AGCTAGAGATGACAGAAGAGGATTACAAGGCACTGATCGATATCATGGAT 516
||.|.|||||||||||.||||||..||||||.||...||||.|.||.
BPUM_1402___g 452 ---TAAAAATGACAGAAGAAGATTACCGGGCACTCATAAGTATCGTTGAA 498
BSNT_02500___ 517 CGGGCCAGAAAAATGGTTGTTTCGAAGGAAGACGGAAGAATGAAAAAAAC 566
.|.|.||.|.| |||.| .|||..|.|||.||..
BPUM_1402___g 499 AGAGTCAAACA----------------GAATA--TAAGCTTAAAAGAATA 530
BSNT_02500___ 567 GGCTCAAGAAACGTAA 582
.|||.||.||
BPUM_1402___g 531 TGCTAAATAA------ 540
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