Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02493 and BPUM_1396
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_02493___ylbJ.1.24716.seq
# -bsequence dna-align/BPUM_1396___ylbJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02493___ylbJ-BPUM_1396___ylbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02493___ylbJ-BPUM_1396___ylbJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02493___ylbJ
# 2: BPUM_1396___ylbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1307
# Identity: 858/1307 (65.6%)
# Similarity: 858/1307 (65.6%)
# Gaps: 178/1307 (13.6%)
# Score: 2632.5
#
#
#=======================================
BSNT_02493___ 1 ATGAACTTGTCGAAGAT-TAATACACTTTTGATTGCCTCGTTTTTTCTTT 49
||||| ||.|| .||.||.||.||.||.||..|.||||||.|.|
BPUM_1396___y 1 ATGAA-------AAAATGGAACACTCTGTTCATCGCTGCTTTTTTTATCT 43
BSNT_02493___ 50 TTTTAACAGCGACTGTCATCTCACATCCACAGGCTTCATTCGAAGCCTCT 99
||||||||||.|||||.||..||||||||||.||.||.||..||||.|||
BPUM_1396___y 44 TTTTAACAGCCACTGTGATTACACATCCACAAGCCTCTTTGCAAGCGTCT 93
BSNT_02493___ 100 AAAACCGGGCTGTCTATGTGGTGGGAGGTTGTGTTTCCGTCATTGCTGCC 149
||||..||.||..|.|||||||||||||||||.|||||.||||||||.||
BPUM_1396___y 94 AAAAATGGACTTGCAATGTGGTGGGAGGTTGTATTTCCATCATTGCTTCC 143
BSNT_02493___ 150 ATTTTTTATTCTGTCCGAACTCTTAATCGGCTTTGGCATTGTGCGGTTTG 199
.|||||||||.|||||||.||.|||||..|.||.||.|||||..|.||||
BPUM_1396___y 144 TTTTTTTATTTTGTCCGAGCTATTAATTAGTTTCGGGATTGTCAGATTTG 193
BSNT_02493___ 200 TCGGTGTTTTGCTTGAGCCTTTTATGCGGCCGATCTTTCGCGTGCCGGGT 249
|||||||.||..|.||.||.||||||||.||.||||||||.|||||.|||
BPUM_1396___y 194 TCGGTGTATTATTAGAACCATTTATGCGCCCTATCTTTCGAGTGCCTGGT 243
BSNT_02493___ 250 GTCGGCGGCTTCGTTCTTGCTATGGGAATGGCATCAGGAAACCCAGCGGG 299
||.|||||.||.||.||.||.|||||||||||.|||||....||..|.||
BPUM_1396___y 244 GTAGGCGGATTTGTCCTAGCGATGGGAATGGCTTCAGGCTTTCCTTCTGG 293
BSNT_02493___ 300 CGCAAAACTCACTGCCCGTCTGCGGCAGGAA----AATCAGATTTCAAGA 345
.||.|||.|.||..|.||.||..|||||||| || |.|| ||..|
BPUM_1396___y 294 TGCGAAATTAACCACACGACTCAGGCAGGAAGGACAA-CTGA---CACAA 339
BSNT_02493___ 346 GTAGAGGCAGAACGGCTCGCGTCGTTTACCAATTCTTCAAACCCGCTCTT 395
.|.||.||||||||.||||..||.|||||.|||||.||.||.||..|.||
BPUM_1396___y 340 ATCGAAGCAGAACGCCTCGTTTCTTTTACAAATTCATCGAATCCATTGTT 389
BSNT_02493___ 396 TATTTTCGGCGCTGTTGCCGTCGGTTTCTTTCAAAACGCGTCA------- 438
.||||||||.||.||.||.||.|||||.||||| |||
BPUM_1396___y 390 CATTTTCGGTGCGGTGGCTGTTGGTTTTTTTCA-------TCATCCAGCT 432
BSNT_02493___ 439 CTAGGCATTTTATTAGCTTCTGCACACTATTTGGGGAATCTTGCCGTCGG 488
.||||.|||.|.||.||.|..|||||.|||||.||||||||.||.||.||
BPUM_1396___y 433 TTAGGAATTGTTTTGGCGTGCGCACATTATTTAGGGAATCTCGCTGTTGG 482
BSNT_02493___ 489 TTTAACAATGCGTTCCTATGGCCGCAAGG-AAGA-GCAGCAACTCAGAAG 536
..|.||.|||||....||| ...|||||| |.|| ||| ||..|.|||||
BPUM_1396___y 483 GGTCACGATGCGGGGATAT-AAAGCAAGGCATGATGCA-CATTTGAGAAG 530
BSNT_02493___ 537 AAAGAAAACGA-TACCTTTCCC-----TTCAGTCAAAGATGCTTTACA-C 579
..|.||.||| ||...||||| ||| ||||.||.|| || |
BPUM_1396___y 531 -CCGTAAGCGATTATTATTCCCACCGTTTC-----AAGAGGCATT-CAGC 573
BSNT_02493___ 580 GCTCTTCATACCGCCAGACTTGCAGAAAAACGGCCCTTGGGTAAAATTTT 629
|||||||||||.||.|||||.|||||.|||.|.||..|.||..|||||||
BPUM_1396___y 574 GCTCTTCATACAGCAAGACTCGCAGAGAAAAGACCGCTCGGCCAAATTTT 623
BSNT_02493___ 630 AGGCGACGCCGTGACGTCTTCTGTTCAAACGCTTCTTATGGTAGGCGGCT 679
|.|.||.||.||.|.|||.||.||.||.||.||..|||||.|.|||||||
BPUM_1396___y 624 AAGTGATGCGGTCATGTCATCAGTCCAGACACTCTTTATGATTGGCGGCT 673
BSNT_02493___ 680 TTATTATTTTATTTTCTGTCTT---CAATCGACTGTTGTCAGTGGTCCAG 726
|||||||.|||||||||||.|| ||| |.||.|.|||||.||.||.
BPUM_1396___y 674 TTATTATCTTATTTTCTGTGTTTAGCAA---AATGCTATCAGTTGTTCAT 720
BSNT_02493___ 727 CTGACTGATGTTTTGTCTGT----------TTTCA-----CAAAAGGAGC 761
.||||.||..|.||.||.|| |.| | ||||.|..||
BPUM_1396___y 721 GTGACGGACCTCTTATCCGTCGGGATCGGATAT-ATGCTGCAAACGATGC 769
BSNT_02493___ 762 ACTGACTTTGTTTCAGCTTCCGACTCAATTGGACATTCCGCTTTTATCAG 811
|| ||||||.|..||||.||..||.||.|..|..|.|
BPUM_1396___y 770 AC--------------CTTCCGCCAGAATTAGATCTTGCGATGATTGCTG 805
BSNT_02493___ 812 GGATGTTTGAAATTACATTAGGCAGCAAGCTTGTCAGCGAGACA-GATGT 860
|..|.||||||||.||.|||||.||..||| ||.|||.|..||| ||.||
BPUM_1396___y 806 GTTTATTTGAAATCACGTTAGGAAGTCAGC-TGACAGGGTCACAGGAAGT 854
BSNT_02493___ 861 TTCTCTTC-TGCAAAAAGCCATTATCGTCAGCTTTATTCTCGGGTTTAGC 909
|.|.|||| |||.|||| |..||.|||||||||||||..|.||.||.|||
BPUM_1396___y 855 TACCCTTCTTGCTAAAA-CGGTTGTCGTCAGCTTTATATTAGGATTCAGC 903
BSNT_02493___ 910 GGCTTTTCCGTACAAGCTCAGGTGGCAGGTATTTTATCGGAAACCGACAT 959
||.|||||.||.|||||||||||.||.||.|||.||.|||.|||.||.||
BPUM_1396___y 904 GGGTTTTCTGTTCAAGCTCAGGTCGCCGGCATTCTAGCGGCAACAGATAT 953
BSNT_02493___ 960 TCGATTTAAACCATTCTTTATCGCACGTTTGCTGCAGGGCGTTTATGCCG 1009
.||.||||||||||||||..||||.||||||||.||.|||.|||||||.|
BPUM_1396___y 954 ACGCTTTAAACCATTCTTCTTCGCTCGTTTGCTCCACGGCATTTATGCAG 1003
BSNT_02493___ 1010 CTGTCTTCGTCATGC--TTTTATGG---AAACCTCTTTACACGGCATGGC 1054
||.|.|| ||| ||||||.| ||.||||||| |||.|
BPUM_1396___y 1004 CTATTTT-----TGCCTTTTTATTGTTCAAGCCTCTTT-------ATGTC 1041
BSNT_02493___ 1055 AT---GATC-CATAT--------CA--GTATGTATTTAAATCTCTTAA-- 1088
| |||| .|||| || |..||..|||.||.| ||
BPUM_1396___y 1042 -TCTCGATCTGATATGGCTCTCCCAGCGGGTGCCTTTGAAGC----AAGC 1086
BSNT_02493___ 1089 CAGCAG--TGACATGCCAACTGC------CTTTATAAACGGCTGGAATCT 1130
|||||| .|.|||| .||.|| ||| |||||||.
BPUM_1396___y 1087 CAGCAGGTCGTCATG--TACAGCAGTGTGCTT----------TGGAATCA 1124
BSNT_02493___ 1131 GCTTGTGCAGATCGGACCTGCTG-TCACACTATGC-GC--GCTGTTTACG 1176
.||||||..||..||.||| .|| ||||.|||||| || |.|.|| |
BPUM_1396___y 1125 ACTTGTGACGACTGGCCCT-TTGATCACGCTATGCAGCTTGATCTT---G 1170
BSNT_02493___ 1177 TACAT-----TATCATTTTTTCTTACAGACTGACAAACGGAA-CAAAAAA 1220
||.|| ||| |||..|||| || .||||||
BPUM_1396___y 1171 TATATGGTGCTAT---------------ACTATCAAA---AAGTAAAAAA 1202
BSNT_02493___ 1221 AGGATGA 1227
|||||||
BPUM_1396___y 1203 AGGATGA 1209
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