Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02492 and BPUM_1395

See Amino acid alignment / Visit BSNT_02492 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_02492___coaD.1.24716.seq
#    -bsequence dna-align/BPUM_1395___coaD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02492___coaD-BPUM_1395___coaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02492___coaD-BPUM_1395___coaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02492___coaD
# 2: BPUM_1395___coaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity:     357/498 (71.7%)
# Similarity:   357/498 (71.7%)
# Gaps:          27/498 ( 5.4%)
# Score: 1192.0
# 
#
#=======================================

BSNT_02492___      1 GTGGCGAGTATAGCTGTCTGTCCCGGCAGTTTTGATCCGGTGACCTACGG     50
                     .|||.||..|||||.||.|||||.||.|||||.|||||.||.||.|..||
BPUM_1395___c      1 ATGGGGAACATAGCCGTTTGTCCGGGTAGTTTCGATCCAGTCACATTGGG     50

BSNT_02492___     51 GCATCTGGACATCATCAAACGCGGGGCGCATATTTTTGAACAAGTGTATG    100
                     .|||.||||.|||||||||.|.||.||..|.||.|||||..|||||||||
BPUM_1395___c     51 CCATTTGGATATCATCAAAAGAGGTGCAAAGATCTTTGATGAAGTGTATG    100

BSNT_02492___    101 TATGTGTGCTGAATAATTCTTCAAAAAAGCCTTTGTTCAGTGTGGAAGAA    150
                     |||||||.||.|||||.||.||.||.||.||.||.||.|..||.||||||
BPUM_1395___c    101 TATGTGTACTAAATAACTCATCCAAGAAACCGTTATTTACCGTTGAAGAA    150

BSNT_02492___    151 CGGTGTGAGCTTCTGAGAGAAGTGACAAAAGACATTCCGAACATAACAGT    200
                     |||||||||||..|..|..|||.|||.||.||..|.||.||.||.|.|||
BPUM_1395___c    151 CGGTGTGAGCTCATTCGCCAAGCGACGAAGGATCTGCCAAATATCAAAGT    200

BSNT_02492___    201 TGAAACATCGCAAGGCCTGTTAATTGATTATGCAAAAAGAAAAAATGCGA    250
                     ||||.|.|..||.||.|||.|..||||||||||.|||..||||.|.||.|
BPUM_1395___c    201 TGAATCCTTTCACGGTCTGCTTGTTGATTATGCGAAACAAAAAGAAGCCA    250

BSNT_02492___    251 AAGCGATTTTAAGAGGCTTGAGAGCTGTATCTGATTTTGAATACGAGATG    300
                     |||..||||||.|.||.||.||||||||..|.||.||||||||.||.|||
BPUM_1395___c    251 AAGTCATTTTACGCGGATTAAGAGCTGTGACAGACTTTGAATATGAAATG    300

BSNT_02492___    301 CAGGGGACATC----AGTAAACCGTGTGCTT----GATGAATCTATTGAG    342
                     ||.||||||||    |.||||    ||| ||    |||||   .|||||.
BPUM_1395___c    301 CAAGGGACATCAATGAATAAA----GTG-TTAAACGATGA---CATTGAA    342

BSNT_02492___    343 ACATTTTTTATGATGACAAACAATCAATATTCGTTTC-TAAGTTCAAGCA    391
                     ||||||||.||||||||.|||||||||||||| |||| ||||.||.||||
BPUM_1395___c    343 ACATTTTTCATGATGACCAACAATCAATATTC-TTTCTTAAGCTCCAGCA    391

BSNT_02492___    392 TCGTAAAAGAAGTGGCGAGATACAACGGCTCGGTATCAGAGT-TTGTACC    440
                     |.||.||||||||.||||.|||..|.||.||.|| |.|..|| ||||.||
BPUM_1395___c    392 TTGTCAAAGAAGTAGCGAAATATGATGGTTCAGT-TAAAGGTCTTGTGCC    440

BSNT_02492___    441 GCCGGAAGTAGAGCTGGCGCTT--CAGCAAAAATTCAGACAAGGATGA    486
                     ....||.|||||....||| ||  .|| |||||||.|   ||||||||
BPUM_1395___c    441 AAAAGAGGTAGAAGAAGCG-TTGATAG-AAAAATTTA---AAGGATGA    483


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.