Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02491 and BPUM_1394
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_02491___ylbH.1.24716.seq
# -bsequence dna-align/BPUM_1394___ylbH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02491___ylbH-BPUM_1394___ylbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02491___ylbH-BPUM_1394___ylbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02491___ylbH
# 2: BPUM_1394___ylbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 588
# Identity: 318/588 (54.1%)
# Similarity: 318/588 (54.1%)
# Gaps: 165/588 (28.1%)
# Score: 978.5
#
#
#=======================================
BSNT_02491___ 0 -------------------------------------------------- 0
BPUM_1394___y 1 ATGAGAGTCATCTCTGGAACGAGAAAAGGCCGCACACTTAAAGCGGTACC 50
BSNT_02491___ 0 -------------------------------------------------- 0
BPUM_1394___y 51 AGGTCAATCAACAAGACCGACGACAGATAAAGTAAAAGAATCGATATTTA 100
BSNT_02491___ 1 --ATGATCGGCCCTTATTTTGACGGGGGCATGGG-ACTTGACTTATTCGC 47
|||||||||||.||||||||.||.|| ||||| .|||||.|||||.||
BPUM_1394___y 101 ATATGATCGGCCCGTATTTTGATGGCGG-ATGGGCGCTTGATTTATTTGC 149
BSNT_02491___ 48 AGGGAGCGGAGGACTTGGAATCGAAGCGCTTTCACGCGGGTTTGAGCATT 97
.||.|||||.||..|.||.||.|||||||||||..|.||.||.||.||||
BPUM_1394___y 150 GGGAAGCGGCGGTTTAGGGATTGAAGCGCTTTCTAGAGGATTCGATCATT 199
BSNT_02491___ 98 GTATATTCGTTGACCGTGATTTTAAAGCGATTCAAACGGTAAAATCTAAT 147
|.|||||||||||.||.|||.|.||.||||||||||||.|||||
BPUM_1394___y 200 GCATATTCGTTGATCGAGATATGAAGGCGATTCAAACGATAAAA------ 243
BSNT_02491___ 148 TTGAAAACGC-------TGGAGCTTA-----CAAAACATGCACAGGTATA 185
.||||.|.| |.|||||.| |||| .|| |.||.|.
BPUM_1394___y 244 -GGAAACCTCAATCAATTAGAGCTGAGTGATCAAA--GTG---AAGTGTT 287
BSNT_02491___ 186 CCGCAATGATGCGGAACGAGCTTTGCAC-----GCTGCTGCTAAA--AGA 228
.||.||.||.||..|.|| ||||| ||.|.||..||| |||
BPUM_1394___y 288 TCGAAACGAGGCAAAGCG-----TGCACTCGCAGCCGTTGTGAAACGAGA 332
BSNT_02491___ 229 GAAACCGGCTTTCGCGGAATTTTTCTCGATCCGCCGTATAAGGAACAAAA 278
|.||.| |||||..|.|||||||||.||||||||.|||||.||.|||.|
BPUM_1394___y 333 GGAATC--CTTTCAAGCAATTTTTCTTGATCCGCCTTATAAAGATCAACA 380
BSNT_02491___ 279 GCTGAAAGCACTT-TTAACGCTGATTGACGA-------ATATCAAATGCT 320
|||.||||||||| ||.|| .|||||||.|| .|||.||
BPUM_1394___y 381 GCTAAAAGCACTTCTTGAC-ATGATTGATGAGCATGCCTTATTAA----- 424
BSNT_02491___ 321 GGAAGAAGACGGCTTTATCGTCGCTGAGCATGACAGAGAGGTCGAGCTTC 370
.|||.||||||.|.|||||...|||||||||.|..||.|||...||.|
BPUM_1394___y 425 --CAGATGACGGCGTGATCGTGTGTGAGCATGATAAGGACGTCACACTAC 472
BSNT_02491___ 371 CCGA--AACCGTAGGAGATCTTGTGATGACAAGAAAAGAAACCTATGGGT 418
|.|| || |..|||.|.|||...||..|||||.|.|||...||.||||
BPUM_1394___y 473 CAGAGGAA--GCTGGACAGCTTTACATATCAAGACAGGAATTGTACGGGT 520
BSNT_02491___ 419 TAACAGGTGTGGCGATTTATAAAAAGAGGGGGTAG--- 453
|.||.|||.|..||||.||||.||||.||||..|.
BPUM_1394___y 521 TGACTGGTATTACGATCTATAGAAAGCGGGGAAATTAA 558
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