Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02484 and BPUM_1389

See Amino acid alignment / Visit BSNT_02484 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_02484___ylbD.1.24716.seq
#    -bsequence dna-align/BPUM_1389___ylbD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02484___ylbD-BPUM_1389___ylbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02484___ylbD-BPUM_1389___ylbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02484___ylbD
# 2: BPUM_1389___ylbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 450
# Identity:     280/450 (62.2%)
# Similarity:   280/450 (62.2%)
# Gaps:          87/450 (19.3%)
# Score: 866.5
# 
#
#=======================================

BSNT_02484___      1 GTGGCGAAT---CAACATGC-----CAATCATTCAATCAATGACTTTAAA     42
                            ||   .||||.||     |||.|| ||.||..||||.||||||
BPUM_1389___y      1 -------ATGACAAACAAGCAAAAACAAACA-TCCATTGATGAATTTAAA     42

BSNT_02484___     43 CAATTCGTCAAAAAGCATCCCAAGCTGATAAAAGAAGTGCGCAAA--GAA     90
                     ||||||||||.|...|||||.|||.|.||..|||||||  |||||  .||
BPUM_1389___y     43 CAATTCGTCAGACGCCATCCGAAGTTAATTCAAGAAGT--GCAAACGCAA     90

BSNT_02484___     91 CAAAGAAGCTGGCAGGACGTATATGAAAATTGGGTCCTCTTCGGGGAGAG    140
                     .|||.|||.|||||....|||||.||||||||||||.|.||.||.|||..
BPUM_1389___y     91 GAAAAAAGTTGGCAAAGTGTATACGAAAATTGGGTCATGTTTGGTGAGGA    140

BSNT_02484___    141 CGACCCGATTTGGGATCCGTATCGGGAACCGGAAGAAGCTTCTGAAGCTG    190
                     .||...|||.|||..|||.||.|||.||.||.||      |||||.|..|
BPUM_1389___y    141 AGATGAGATGTGGTCTCCTTACCGGCAAACGCAA------TCTGAGGACG    184

BSNT_02484___    191 T-------------GCCTGAAACACCGCAAA----------AAAA--TGA    215
                     |             ||||.|||    ||.||          ||||  .||
BPUM_1389___y    185 TGAAAGAAGAAAAAGCCTCAAA----GCCAAGTGAATCGGGAAAAGCAGA    230

BSNT_02484___    216 TTTTGTCTCGAAAATGGTGACAGCGGTGAAAAAGATGGATGTCAATCAAA    265
                     ||||.|.||.||||||||..|.||.||||||||.|||||.|...||||||
BPUM_1389___y    231 TTTTATGTCTAAAATGGTTTCTGCTGTGAAAAAAATGGACGCTGATCAAA    280

BSNT_02484___    266 TGAACGAACAAATCAATAAAATGAGCCAGTCGATCTCATCGTTGCAAAGC    315
                     ||||.|||||||||||.||||||||||||||.||.||.||.||.||||| 
BPUM_1389___y    281 TGAATGAACAAATCAACAAAATGAGCCAGTCTATTTCCTCTTTACAAAG-    329

BSNT_02484___    316 CTTCTTAAT---AC-ATTTTCCGGAA---GCGGACAGAAGCATTCTCAGC    358
                        ||||.|   || ||||||...||   ||..|.||||           
BPUM_1389___y    330 ---CTTACTCGGACAATTTTCATCAAATGGCTCAAAGAA-----------    365

BSNT_02484___    359 CAGGT---TCTGGA------CAGCATCCTTTTTCTTTTCGAAAGGATTAA    399
                      ||||   ||||||      |||||.||.||.||.||..|.||.||||||
BPUM_1389___y    366 -AGGTTCATCTGGAGGCAGTCAGCACCCATTCTCCTTCAGGAAAGATTAA    414


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