Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02484 and BPUM_1389
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02484___ylbD.1.24716.seq
# -bsequence dna-align/BPUM_1389___ylbD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02484___ylbD-BPUM_1389___ylbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02484___ylbD-BPUM_1389___ylbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02484___ylbD
# 2: BPUM_1389___ylbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 450
# Identity: 280/450 (62.2%)
# Similarity: 280/450 (62.2%)
# Gaps: 87/450 (19.3%)
# Score: 866.5
#
#
#=======================================
BSNT_02484___ 1 GTGGCGAAT---CAACATGC-----CAATCATTCAATCAATGACTTTAAA 42
|| .||||.|| |||.|| ||.||..||||.||||||
BPUM_1389___y 1 -------ATGACAAACAAGCAAAAACAAACA-TCCATTGATGAATTTAAA 42
BSNT_02484___ 43 CAATTCGTCAAAAAGCATCCCAAGCTGATAAAAGAAGTGCGCAAA--GAA 90
||||||||||.|...|||||.|||.|.||..||||||| ||||| .||
BPUM_1389___y 43 CAATTCGTCAGACGCCATCCGAAGTTAATTCAAGAAGT--GCAAACGCAA 90
BSNT_02484___ 91 CAAAGAAGCTGGCAGGACGTATATGAAAATTGGGTCCTCTTCGGGGAGAG 140
.|||.|||.|||||....|||||.||||||||||||.|.||.||.|||..
BPUM_1389___y 91 GAAAAAAGTTGGCAAAGTGTATACGAAAATTGGGTCATGTTTGGTGAGGA 140
BSNT_02484___ 141 CGACCCGATTTGGGATCCGTATCGGGAACCGGAAGAAGCTTCTGAAGCTG 190
.||...|||.|||..|||.||.|||.||.||.|| |||||.|..|
BPUM_1389___y 141 AGATGAGATGTGGTCTCCTTACCGGCAAACGCAA------TCTGAGGACG 184
BSNT_02484___ 191 T-------------GCCTGAAACACCGCAAA----------AAAA--TGA 215
| ||||.||| ||.|| |||| .||
BPUM_1389___y 185 TGAAAGAAGAAAAAGCCTCAAA----GCCAAGTGAATCGGGAAAAGCAGA 230
BSNT_02484___ 216 TTTTGTCTCGAAAATGGTGACAGCGGTGAAAAAGATGGATGTCAATCAAA 265
||||.|.||.||||||||..|.||.||||||||.|||||.|...||||||
BPUM_1389___y 231 TTTTATGTCTAAAATGGTTTCTGCTGTGAAAAAAATGGACGCTGATCAAA 280
BSNT_02484___ 266 TGAACGAACAAATCAATAAAATGAGCCAGTCGATCTCATCGTTGCAAAGC 315
||||.|||||||||||.||||||||||||||.||.||.||.||.|||||
BPUM_1389___y 281 TGAATGAACAAATCAACAAAATGAGCCAGTCTATTTCCTCTTTACAAAG- 329
BSNT_02484___ 316 CTTCTTAAT---AC-ATTTTCCGGAA---GCGGACAGAAGCATTCTCAGC 358
||||.| || ||||||...|| ||..|.||||
BPUM_1389___y 330 ---CTTACTCGGACAATTTTCATCAAATGGCTCAAAGAA----------- 365
BSNT_02484___ 359 CAGGT---TCTGGA------CAGCATCCTTTTTCTTTTCGAAAGGATTAA 399
|||| |||||| |||||.||.||.||.||..|.||.||||||
BPUM_1389___y 366 -AGGTTCATCTGGAGGCAGTCAGCACCCATTCTCCTTCAGGAAAGATTAA 414
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