Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02482 and BPUM_1387

See Amino acid alignment / Visit BSNT_02482 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_02482___ylbB.1.24716.seq
#    -bsequence dna-align/BPUM_1387___ylbB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02482___ylbB-BPUM_1387___ylbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02482___ylbB-BPUM_1387___ylbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02482___ylbB
# 2: BPUM_1387___ylbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 484
# Identity:     284/484 (58.7%)
# Similarity:   284/484 (58.7%)
# Gaps:          98/484 (20.2%)
# Score: 725.5
# 
#
#=======================================

BSNT_02482___      1 ATGACAAAAATAAAAGATCTG--ATGACAGCCGACTTGCAATATTGCACG     48
                     ||||||||   |||||...||  |||.||        ||||.||      
BPUM_1387___y      1 ATGACAAA---AAAAGTAGTGACATGTCA--------GCAAGAT------     33

BSNT_02482___     49 GTATTAGATAATGTATATGAAGCTGCAGTAAAGATGAAGGACGCAAATGT     98
                           ||.|||...||||||||.|||||.||.||||..||.|||.|..|
BPUM_1387___y     34 ------GACAATTCGTATGAAGCCGCAGTCAAAATGAGAGATGCAGACAT     77

BSNT_02482___     99 AGGAGCGATACCGGTAGTTGATGAGGACGGGGA--AACATTGGTCGGCAT    146
                     .||.||.||.||.||.|||      .||||.||  |.|  |.||.|||||
BPUM_1387___y     78 TGGTGCCATTCCTGTGGTT------AACGGAGATCAGC--TCGTTGGCAT    119

BSNT_02482___    147 CGTAACCGACCGCGATCTCGTATTAAGAGGAATCGCCATCAAAAAA-CCG    195
                     .||.||.|||||.||.||.|||.|.|||||.||.| ||..|||||| ||.
BPUM_1387___y    120 TGTCACTGACCGTGACCTTGTACTCAGAGGCATTG-CAGAAAAAAAGCCA    168

BSNT_02482___    196 AACTCGCAAAAAATCACTGACGCG---ATGACCGAA--AA--ACCTGTCA    238
                     |||||.||..||.|   .|.|.||   |||| ||||  ||  | |||.||
BPUM_1387___y    169 AACTCACAGGAAGT---AGGCTCGATAATGA-CGAAGGAAGTA-CTGACA    213

BSNT_02482___    239 GTGTGGAGGAAGATGCTTCAGTCGATGAGGTTCTTCATTTGATGGCATCG    288
                       |..||.||||||||..||.|.||.||..||.|||...|||||.||..|
BPUM_1387___y    214 --GCAGAAGAAGATGCAACACTTGAAGAAATTGTTCGGCTGATGTCAGAG    261

BSNT_02482___    289 CATCAGCTCAGAAGGATACCAGTTACAAAAAATAAAAAAC-------TGA    331
                     ||.|||||..|..|.||.||.|||       .||||||||       |.|
BPUM_1387___y    262 CACCAGCTTCGCCGCATTCCTGTT-------GTAAAAAACGGTGCATTAA    304

BSNT_02482___    332 CTGGAATTGTCACGCTTGGTGATCTTTC---------TTTATCTGAGCAA    372
                     |.||.||||||.|.|||||.|||.|.||         |||||        
BPUM_1387___y    305 CAGGGATTGTCGCTCTTGGAGATTTATCCGTTGAAGATTTAT--------    346

BSNT_02482___    373 ACGAATGAACGTGCCG-----GCAGCGCCTTATCGGATATTTCCGAAGGT    417
                      |||||||.||.||.|     |||    ||.| |.||.||.||..||...
BPUM_1387___y    347 -CGAATGATCGCGCAGGAGATGCA----CTGA-CAGAAATCTCTCAACAG    390

BSNT_02482___    418 GATAATAGA----GAAGAAGGTTTTTTTCATTAA    447
                     |||.| |||    |.|.||||.|||.|.||||||
BPUM_1387___y    391 GATCA-AGATCATGGACAAGGATTTCTCCATTAA    423


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