Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02482 and BPUM_1387
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02482___ylbB.1.24716.seq
# -bsequence dna-align/BPUM_1387___ylbB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02482___ylbB-BPUM_1387___ylbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02482___ylbB-BPUM_1387___ylbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02482___ylbB
# 2: BPUM_1387___ylbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 484
# Identity: 284/484 (58.7%)
# Similarity: 284/484 (58.7%)
# Gaps: 98/484 (20.2%)
# Score: 725.5
#
#
#=======================================
BSNT_02482___ 1 ATGACAAAAATAAAAGATCTG--ATGACAGCCGACTTGCAATATTGCACG 48
|||||||| |||||...|| |||.|| ||||.||
BPUM_1387___y 1 ATGACAAA---AAAAGTAGTGACATGTCA--------GCAAGAT------ 33
BSNT_02482___ 49 GTATTAGATAATGTATATGAAGCTGCAGTAAAGATGAAGGACGCAAATGT 98
||.|||...||||||||.|||||.||.||||..||.|||.|..|
BPUM_1387___y 34 ------GACAATTCGTATGAAGCCGCAGTCAAAATGAGAGATGCAGACAT 77
BSNT_02482___ 99 AGGAGCGATACCGGTAGTTGATGAGGACGGGGA--AACATTGGTCGGCAT 146
.||.||.||.||.||.||| .||||.|| |.| |.||.|||||
BPUM_1387___y 78 TGGTGCCATTCCTGTGGTT------AACGGAGATCAGC--TCGTTGGCAT 119
BSNT_02482___ 147 CGTAACCGACCGCGATCTCGTATTAAGAGGAATCGCCATCAAAAAA-CCG 195
.||.||.|||||.||.||.|||.|.|||||.||.| ||..|||||| ||.
BPUM_1387___y 120 TGTCACTGACCGTGACCTTGTACTCAGAGGCATTG-CAGAAAAAAAGCCA 168
BSNT_02482___ 196 AACTCGCAAAAAATCACTGACGCG---ATGACCGAA--AA--ACCTGTCA 238
|||||.||..||.| .|.|.|| |||| |||| || | |||.||
BPUM_1387___y 169 AACTCACAGGAAGT---AGGCTCGATAATGA-CGAAGGAAGTA-CTGACA 213
BSNT_02482___ 239 GTGTGGAGGAAGATGCTTCAGTCGATGAGGTTCTTCATTTGATGGCATCG 288
|..||.||||||||..||.|.||.||..||.|||...|||||.||..|
BPUM_1387___y 214 --GCAGAAGAAGATGCAACACTTGAAGAAATTGTTCGGCTGATGTCAGAG 261
BSNT_02482___ 289 CATCAGCTCAGAAGGATACCAGTTACAAAAAATAAAAAAC-------TGA 331
||.|||||..|..|.||.||.||| .|||||||| |.|
BPUM_1387___y 262 CACCAGCTTCGCCGCATTCCTGTT-------GTAAAAAACGGTGCATTAA 304
BSNT_02482___ 332 CTGGAATTGTCACGCTTGGTGATCTTTC---------TTTATCTGAGCAA 372
|.||.||||||.|.|||||.|||.|.|| |||||
BPUM_1387___y 305 CAGGGATTGTCGCTCTTGGAGATTTATCCGTTGAAGATTTAT-------- 346
BSNT_02482___ 373 ACGAATGAACGTGCCG-----GCAGCGCCTTATCGGATATTTCCGAAGGT 417
|||||||.||.||.| ||| ||.| |.||.||.||..||...
BPUM_1387___y 347 -CGAATGATCGCGCAGGAGATGCA----CTGA-CAGAAATCTCTCAACAG 390
BSNT_02482___ 418 GATAATAGA----GAAGAAGGTTTTTTTCATTAA 447
|||.| ||| |.|.||||.|||.|.||||||
BPUM_1387___y 391 GATCA-AGATCATGGACAAGGATTTCTCCATTAA 423
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