Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02481 and BPUM_1386
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02481___ylbA.1.24716.seq
# -bsequence dna-align/BPUM_1386___ylbA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02481___ylbA-BPUM_1386___ylbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02481___ylbA-BPUM_1386___ylbA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02481___ylbA
# 2: BPUM_1386___ylbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 232/409 (56.7%)
# Similarity: 232/409 (56.7%)
# Gaps: 89/409 (21.8%)
# Score: 565.5
#
#
#=======================================
BSNT_02481___ 1 GTGTTGAAGTTT-ACTGAAAGCGGACTTGAAGGGGTTAAGGCTGAGCTCA 49
.|||||||| |..|.|.|.||| |||||..||| || ||
BPUM_1386___y 1 ---GTGAAGTTTGAAGGTACGGGGA-TTGAAAAGGT--------AG--CA 36
BSNT_02481___ 50 GCTGGC----------TAGACGACTTAATGGAAAGCAAAGGTCTCATCAG 89
||||.| ||||...|.|.||||||||..||||..|..|..|
BPUM_1386___y 37 GCTGACTTAAATAAATTAGATTTCATCATGGAAAGTGAAGGATTTGTACG 86
BSNT_02481___ 90 AGCGGGTCAATGGGATTACGAGAGAGTCACCTATGACAAGAAGTTTTCGA 139
|||.|.||||||||||||.|||.|.||.||.||.||||..||||.|...|
BPUM_1386___y 87 AGCCGATCAATGGGATTATGAGCGTGTGACGTACGACAGAAAGTATAACA 136
BSNT_02481___ 140 CGATTGAGGGCACGTTTTACCTGCGGATACAAGGAATTGCGG-------- 181
.|.|.|||||.||.|||||..|.||||| ||.|||
BPUM_1386___y 137 TGGTAGAGGGAACCTTTTATTTACGGAT--------TTCCGGCTACGCCA 178
BSNT_02481___ 182 CAGAGGGTGATGTCGG------AAGCGGACGCGCGGTGATTCAATTAATG 225
|.||.||.|||||.|| |||.|.||.| ||.||..|..|.
BPUM_1386___y 179 CCGAAGGAGATGTTGGTTCAAAAAGAGCACAC------ATACAGCTTCTC 222
BSNT_02481___ 226 TCCCCTCTCCTAGGCAAGCATTATTACCCGCACGGAGTAGAGTATGGAGA 275
.|.|||.|.||.||.||.||||||||.|||||.||.||.||.||.||.||
BPUM_1386___y 223 ACACCTTTACTCGGAAAACATTATTATCCGCATGGTGTTGAATACGGCGA 272
BSNT_02481___ 276 AACGGAAGAGTTTCCCGTACAGGTTGTGA--CAA-AAAGCAAA-----GC 317
|...||||| |||||| || ||..|.|.| ||| .||||||| ||
BPUM_1386___y 273 AGGCGAAGA-TTTCCC-TA-AGTCTCTCATTCAATCAAGCAAAAAAACGC 319
BSNT_02481___ 318 ACTGATTCAGGACATATCCGACATGTTAAAAAC-----------AGTTCA 356
.||| |||| |.||.| .|||||| |.|.||
BPUM_1386___y 320 -TTGA-TCAG-------CTGAAA---GAAAAACTAGAAGCAATGACTGCA 357
BSNT_02481___ 357 AATG--TAA 363
.|.| |||
BPUM_1386___y 358 GAAGCATAA 366
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