Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02479 and BPUM_1385

See Amino acid alignment / Visit BSNT_02479 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_02479___ctaG.1.24716.seq
#    -bsequence dna-align/BPUM_1385___ctaG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02479___ctaG-BPUM_1385___ctaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02479___ctaG-BPUM_1385___ctaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02479___ctaG
# 2: BPUM_1385___ctaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity:     613/955 (64.2%)
# Similarity:   613/955 (64.2%)
# Gaps:         137/955 (14.3%)
# Score: 1798.5
# 
#
#=======================================

BSNT_02479___      1 ATGAATCAGTTGGAGATATTCGGGTTTCGCGCGATGTGGAGCCCTTATCT     50
                     |||.|..|.||.|||||||||||.|||||.|||.|.||||||||||| ||
BPUM_1385___c      1 ATGGAGAACTTAGAGATATTCGGATTTCGGGCGTTATGGAGCCCTTA-CT     49

BSNT_02479___     51 TTT----TTGTATCCTGT--TAGGCATTACGGCGCTTTATCT-CTATTTT     93
                     .||    |.|.||  |||  || |||  .|.||.|||||||| ||     
BPUM_1385___c     50 ATTTGACTAGCAT--TGTCATA-GCA--GCTGCTCTTTATCTGCT-----     89

BSNT_02479___     94 TACAGGCGAATGTCTT----CAAAGCCGA---ATCGAATAACTGGT-AAA    135
                                 ||||    |||||..||   ||||....|| ||| |||
BPUM_1385___c     90 ------------TCTTGTGACAAAGGGGAAGCATCGTGCGAC-GGTAAAA    126

BSNT_02479___    136 GAGATGGTGTGCTTTCTGTCGGCGATGCTGTTTTTATATGCAGCCG----    181
                     ||||....||..||||||.|||.|.|  ||||.|..|||.| ||||    
BPUM_1385___c    127 GAGAAAACGTTGTTTCTGACGGGGCT--TGTTCTGTTATAC-GCCGTGAA    173

BSNT_02479___    182 AGGGAAGCCCGGTTGACCTGCTCGGACATATTATGTTCAGCGCACATATG    231
                     |||| |||||..||||..|..|.||||||||||||||.||.|||||||||
BPUM_1385___c    174 AGGG-AGCCCAATTGATTTAATGGGACATATTATGTTTAGTGCACATATG    222

BSNT_02479___    232 GTGCAGATGGCCGTCCTGTATTTGGTTGTCCCTCCACTGTTAATCGCGGG    281
                     |.|||.|||||.||.||.|||||.||..|.||.||.||..|.||..|.||
BPUM_1385___c    223 GCGCAAATGGCGGTGCTCTATTTAGTCATTCCGCCCCTCCTTATTACAGG    272

BSNT_02479___    282 AATTCCTGCATGGC--TCTGGGA-----------AAAAATTATTTTCAGG    318
                     |.|.|||||  |||  |.|||||           |||.|      .||||
BPUM_1385___c    273 ATTGCCTGC--GGCTATATGGGAGCGGATCATACAAACA------CCAGG    314

BSNT_02479___    319 CCTTCAATCAAACCGGTTTTTTCCTT--TTTTACAACGCCTTTAATTGCT    366
                     |.|||      |.|.|.|.||||.||  ||||.||| ||||||||||||.
BPUM_1385___c    315 CATTC------AGCAGATGTTTCGTTTGTTTTCCAA-GCCTTTAATTGCA    357

BSNT_02479___    367 TTGCTTTTGTTTAACGGCATTTTTTCTTTATATCATGTACCGCTTATATT    416
                     |||||...||||||.|||.|.|||||..|.||||||.|.|||||..|.||
BPUM_1385___c    358 TTGCTCGGGTTTAATGGCTTGTTTTCGATGTATCATATTCCGCTGGTGTT    407

BSNT_02479___    417 TGATACTGTCAAAACCGATTCGTTTTACCAT---------ACATTCATCA    457
                     |||...|||.|||||.|||.|||||||.|||         |||.|..|||
BPUM_1385___c    408 TGACTTTGTGAAAACAGATCCGTTTTATCATGCGCTGATGACAGTAGTCA    457

BSNT_02479___    458 CTTGGCTTATCTTTGTGCTTGCATTCTTCATGTGGTGGCCGCTTGTTCAT    507
                     .||   |||||     || |||.||.|||||||||||||||||.||||||
BPUM_1385___c    458 TTT---TTATC-----GC-TGCCTTTTTCATGTGGTGGCCGCTCGTTCAT    498

BSNT_02479___    508 AAGGTGGGGC----GTCTACGGCAGCTCAGCGGCTTGATGAAGCTGGGGT    553
                     ||.||    |    |||..|.||||.|.|..|||.|..|.|||||.||.|
BPUM_1385___c    499 AAAGT----CCAAAGTCAGCCGCAGATTACGGGCATTTTAAAGCTTGGTT    544

BSNT_02479___    554 ATATTATGGCGGACGGTATGCTGCTCACACCTGCTTGCGCCTTAATCATG    603
                     ||||.|||||.|||||.||..|..|.||.|||||.||.||..|.||||||
BPUM_1385___c    545 ATATCATGGCAGACGGGATATTAATGACCCCTGCGTGTGCACTCATCATG    594

BSNT_02479___    604 TTCAGCGGTGCGCCGTTATACGCCACCTATACAGATCCGTCTGCATGGGC    653
                     ||.||.|..||.||..|.||.|||||||||.|.||..|...|||||||..
BPUM_1385___c    595 TTTAGTGAGGCACCAATCTATGCCACCTATTCTGACGCTGGTGCATGGAT    644

BSNT_02479___    654 CGAGGCAATGCGCCTTTGCGTGCCAGCGGATATGATGGGGCAGGTC--CC    701
                     ..||||..|||..||.|||||.|||...||||.|.|  ||||||||  .|
BPUM_1385___c    645 ACAGGCGCTGCATCTATGCGTTCCAAGTGATACGCT--GGCAGGTCTTGC    692

BSNT_02479___    702 ATTAACAGGACCGGAGATGTTGAATACACTGCCTTTGTTAGAGGATCAGC    751
                     |.|.|||||.||.||.|||||..||||..||||..||.||||.||.||||
BPUM_1385___c    693 ACTCACAGGTCCTGAAATGTTCCATACCTTGCCGCTGCTAGAAGACCAGC    742

BSNT_02479___    752 AGCTCGGGGCCGTCATGATGAAAATCATTCAGGAAATTGTGTACGG----    797
                     ||||.||.||..|..||||||||||.||||||||.|||||||||||    
BPUM_1385___c    743 AGCTAGGCGCGATTTTGATGAAAATTATTCAGGAGATTGTGTACGGCTCG    792

BSNT_02479___    798 -TACTTTTTTGGCGATTATTTTTTTCCAATGGGTGAAG-AAAGAAAGGGA    845
                      |.|||     ||..||.|.||.||..|.|||| .||| ||||||||.|.
BPUM_1385___c    793 ATCCTT-----GCTGTTGTCTTCTTTGACTGGG-CAAGAAAAGAAAGAGC    836

BSNT_02479___    846 AAAGGACGGGCAGGA--AGAGCCGCCGTATATTCAGCAGACGATATCATA    893
                     .||.||  .||.|.|  |||..|||.|   ||||      |||.|| ||.
BPUM_1385___c    837 GAAAGA--TGCCGTACCAGATGCGCTG---ATTC------CGAAAT-ATG    874

BSNT_02479___    894 A----    894
                     |    
BPUM_1385___c    875 AATGA    879


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