Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02479 and BPUM_1385
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02479___ctaG.1.24716.seq
# -bsequence dna-align/BPUM_1385___ctaG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02479___ctaG-BPUM_1385___ctaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02479___ctaG-BPUM_1385___ctaG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02479___ctaG
# 2: BPUM_1385___ctaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity: 613/955 (64.2%)
# Similarity: 613/955 (64.2%)
# Gaps: 137/955 (14.3%)
# Score: 1798.5
#
#
#=======================================
BSNT_02479___ 1 ATGAATCAGTTGGAGATATTCGGGTTTCGCGCGATGTGGAGCCCTTATCT 50
|||.|..|.||.|||||||||||.|||||.|||.|.||||||||||| ||
BPUM_1385___c 1 ATGGAGAACTTAGAGATATTCGGATTTCGGGCGTTATGGAGCCCTTA-CT 49
BSNT_02479___ 51 TTT----TTGTATCCTGT--TAGGCATTACGGCGCTTTATCT-CTATTTT 93
.|| |.|.|| ||| || ||| .|.||.|||||||| ||
BPUM_1385___c 50 ATTTGACTAGCAT--TGTCATA-GCA--GCTGCTCTTTATCTGCT----- 89
BSNT_02479___ 94 TACAGGCGAATGTCTT----CAAAGCCGA---ATCGAATAACTGGT-AAA 135
|||| |||||..|| ||||....|| ||| |||
BPUM_1385___c 90 ------------TCTTGTGACAAAGGGGAAGCATCGTGCGAC-GGTAAAA 126
BSNT_02479___ 136 GAGATGGTGTGCTTTCTGTCGGCGATGCTGTTTTTATATGCAGCCG---- 181
||||....||..||||||.|||.|.| ||||.|..|||.| ||||
BPUM_1385___c 127 GAGAAAACGTTGTTTCTGACGGGGCT--TGTTCTGTTATAC-GCCGTGAA 173
BSNT_02479___ 182 AGGGAAGCCCGGTTGACCTGCTCGGACATATTATGTTCAGCGCACATATG 231
|||| |||||..||||..|..|.||||||||||||||.||.|||||||||
BPUM_1385___c 174 AGGG-AGCCCAATTGATTTAATGGGACATATTATGTTTAGTGCACATATG 222
BSNT_02479___ 232 GTGCAGATGGCCGTCCTGTATTTGGTTGTCCCTCCACTGTTAATCGCGGG 281
|.|||.|||||.||.||.|||||.||..|.||.||.||..|.||..|.||
BPUM_1385___c 223 GCGCAAATGGCGGTGCTCTATTTAGTCATTCCGCCCCTCCTTATTACAGG 272
BSNT_02479___ 282 AATTCCTGCATGGC--TCTGGGA-----------AAAAATTATTTTCAGG 318
|.|.||||| ||| |.||||| |||.| .||||
BPUM_1385___c 273 ATTGCCTGC--GGCTATATGGGAGCGGATCATACAAACA------CCAGG 314
BSNT_02479___ 319 CCTTCAATCAAACCGGTTTTTTCCTT--TTTTACAACGCCTTTAATTGCT 366
|.||| |.|.|.|.||||.|| ||||.||| ||||||||||||.
BPUM_1385___c 315 CATTC------AGCAGATGTTTCGTTTGTTTTCCAA-GCCTTTAATTGCA 357
BSNT_02479___ 367 TTGCTTTTGTTTAACGGCATTTTTTCTTTATATCATGTACCGCTTATATT 416
|||||...||||||.|||.|.|||||..|.||||||.|.|||||..|.||
BPUM_1385___c 358 TTGCTCGGGTTTAATGGCTTGTTTTCGATGTATCATATTCCGCTGGTGTT 407
BSNT_02479___ 417 TGATACTGTCAAAACCGATTCGTTTTACCAT---------ACATTCATCA 457
|||...|||.|||||.|||.|||||||.||| |||.|..|||
BPUM_1385___c 408 TGACTTTGTGAAAACAGATCCGTTTTATCATGCGCTGATGACAGTAGTCA 457
BSNT_02479___ 458 CTTGGCTTATCTTTGTGCTTGCATTCTTCATGTGGTGGCCGCTTGTTCAT 507
.|| ||||| || |||.||.|||||||||||||||||.||||||
BPUM_1385___c 458 TTT---TTATC-----GC-TGCCTTTTTCATGTGGTGGCCGCTCGTTCAT 498
BSNT_02479___ 508 AAGGTGGGGC----GTCTACGGCAGCTCAGCGGCTTGATGAAGCTGGGGT 553
||.|| | |||..|.||||.|.|..|||.|..|.|||||.||.|
BPUM_1385___c 499 AAAGT----CCAAAGTCAGCCGCAGATTACGGGCATTTTAAAGCTTGGTT 544
BSNT_02479___ 554 ATATTATGGCGGACGGTATGCTGCTCACACCTGCTTGCGCCTTAATCATG 603
||||.|||||.|||||.||..|..|.||.|||||.||.||..|.||||||
BPUM_1385___c 545 ATATCATGGCAGACGGGATATTAATGACCCCTGCGTGTGCACTCATCATG 594
BSNT_02479___ 604 TTCAGCGGTGCGCCGTTATACGCCACCTATACAGATCCGTCTGCATGGGC 653
||.||.|..||.||..|.||.|||||||||.|.||..|...|||||||..
BPUM_1385___c 595 TTTAGTGAGGCACCAATCTATGCCACCTATTCTGACGCTGGTGCATGGAT 644
BSNT_02479___ 654 CGAGGCAATGCGCCTTTGCGTGCCAGCGGATATGATGGGGCAGGTC--CC 701
..||||..|||..||.|||||.|||...||||.|.| |||||||| .|
BPUM_1385___c 645 ACAGGCGCTGCATCTATGCGTTCCAAGTGATACGCT--GGCAGGTCTTGC 692
BSNT_02479___ 702 ATTAACAGGACCGGAGATGTTGAATACACTGCCTTTGTTAGAGGATCAGC 751
|.|.|||||.||.||.|||||..||||..||||..||.||||.||.||||
BPUM_1385___c 693 ACTCACAGGTCCTGAAATGTTCCATACCTTGCCGCTGCTAGAAGACCAGC 742
BSNT_02479___ 752 AGCTCGGGGCCGTCATGATGAAAATCATTCAGGAAATTGTGTACGG---- 797
||||.||.||..|..||||||||||.||||||||.|||||||||||
BPUM_1385___c 743 AGCTAGGCGCGATTTTGATGAAAATTATTCAGGAGATTGTGTACGGCTCG 792
BSNT_02479___ 798 -TACTTTTTTGGCGATTATTTTTTTCCAATGGGTGAAG-AAAGAAAGGGA 845
|.||| ||..||.|.||.||..|.|||| .||| ||||||||.|.
BPUM_1385___c 793 ATCCTT-----GCTGTTGTCTTCTTTGACTGGG-CAAGAAAAGAAAGAGC 836
BSNT_02479___ 846 AAAGGACGGGCAGGA--AGAGCCGCCGTATATTCAGCAGACGATATCATA 893
.||.|| .||.|.| |||..|||.| |||| |||.|| ||.
BPUM_1385___c 837 GAAAGA--TGCCGTACCAGATGCGCTG---ATTC------CGAAAT-ATG 874
BSNT_02479___ 894 A---- 894
|
BPUM_1385___c 875 AATGA 879
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