Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02470 and BPUM_1379

See Amino acid alignment / Visit BSNT_02470 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_02470___ctaA.1.24716.seq
#    -bsequence dna-align/BPUM_1379___ctaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02470___ctaA-BPUM_1379___ctaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02470___ctaA-BPUM_1379___ctaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02470___ctaA
# 2: BPUM_1379___ctaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 967
# Identity:     658/967 (68.0%)
# Similarity:   658/967 (68.0%)
# Gaps:          89/967 ( 9.2%)
# Score: 2099.5
# 
#
#=======================================

BSNT_02470___      1 ATGAATAAAGCATTAA-------AAGCTCTCGGTGTTCTGACGACATTTG     43
                     |||||....||.||||       .|||     |||.||  ||.||.||||
BPUM_1379___c      1 ATGAAATTTGCTTTAAGGTTATTGAGC-----GTGATC--ACAACGTTTG     43

BSNT_02470___     44 TCATGCTAATTGTTTTAATCGGGGGTGCCCTCGTTACAAAAACAGGTTCC     93
                     |.|||||.||.|||||.||.||.|||||.||.||.||||||||.||.||.
BPUM_1379___c     44 TGATGCTGATCGTTTTGATTGGTGGTGCGCTTGTGACAAAAACCGGCTCG     93

BSNT_02470___     94 GGCCAAGGATGCGGCAGACAGTGGCCGCTGTGTCACGGCCGTTTTTTCCC    143
                     ||.|..||.||||||||||||||||||||.||.|||||.|||||.|||||
BPUM_1379___c     94 GGTCTTGGTTGCGGCAGACAGTGGCCGCTTTGCCACGGTCGTTTCTTCCC    143

BSNT_02470___    144 TGAACTGAATCCGGCTTCAATTATTGAATGGAGCCACCGATTCGCAAGCG    193
                     ||||.||||.||.|||||.||.|||||||||||.|||||..|..|||..|
BPUM_1379___c    144 TGAAATGAACCCTGCTTCCATCATTGAATGGAGTCACCGCATGTCAACAG    193

BSNT_02470___    194 GAATCTCTATTATCCTTGTGCTAAGC-CTTGCGTTTTGGTCATGGAGAAA    242
                     |..|.||.|..||.||||| ||..|| ||.|||.|.|..|..||||.|||
BPUM_1379___c    194 GGGTTTCAACCATTCTTGT-CTTGGCACTGGCGGTCTTATGCTGGAAAAA    242

BSNT_02470___    243 AATCACGCCGATTTTTCGTGAAACAACGTTTCTCGCGATCATGTCAATTA    292
                     .||.|..||..|.||.||||||||.|..|||.|.|..||||||||.||||
BPUM_1379___c    243 GATTAGTCCAGTATTCCGTGAAACCAAATTTTTGGTCATCATGTCGATTA    292

BSNT_02470___    293 TCTTTTTATTTCTTCAGGCATTGCTTGGCGCATTGGCTGTCGTATTCGGT    342
                     |.||.|||.|.||.||||||.||.|.||.||..|.||.|||||.||.|||
BPUM_1379___c    293 TATTCTTACTGCTACAGGCACTGTTAGGGGCTCTTGCCGTCGTGTTTGGT    342

BSNT_02470___    343 TCGAACGCGCTGATTATGGCGCTTCACTTCGGCATCTCATTAATTTCTTT    392
                     ||.|||||.||..|.|||||.||.||||||||.||.|||.|.||||||||
BPUM_1379___c    343 TCCAACGCACTTGTCATGGCACTGCACTTCGGTATTTCACTCATTTCTTT    392

BSNT_02470___    393 TGCTTCAGTGCTTATTTTAACATTG---------CTCATATTTGAAGCTG    433
                     ||||||||||||         ||||         ||..||||.||.||  
BPUM_1379___c    393 TGCTTCAGTGCT---------ATTGCTTGCGCTTCTTGTATTCGAGGC--    431

BSNT_02470___    434 ATAA----ATCAGTCAGAACACTGGTTAAGCCGCTTCAAATCGGCAAAAA    479
                       ||    |||.|..|.||..||.||.|||||||||||.|||||||||||
BPUM_1379___c    432 --AACGCGATCTGAAACAAAGCTAGTGAAGCCGCTTCATATCGGCAAAAA    479

BSNT_02470___    480 GATGCAATTTCACA-TGATAGGAATTTTGAT---ATATTCCTATATCGTT    525
                     .|||||.|||||.| |.||.|    ||||||   .|||.|.||||||||.
BPUM_1379___c    480 AATGCAGTTTCATATTTATGG----TTTGATCACTTATACGTATATCGTG    525

BSNT_02470___    526 GTGTATACAGGCGCATATGTAAGACACACTGAATCAAGTCTGGCATGTCC    575
                     |||||.||.||.||.||||||||.||.||..|||||||.||.||.||..|
BPUM_1379___c    526 GTGTACACGGGTGCTTATGTAAGGCATACAAAATCAAGCCTTGCTTGCTC    575

BSNT_02470___    576 TGATGTGCCGCTGTG-----CAGCCCGCTGAACAATGGGCTTCCGACCCA    620
                     .|.|.|.|||.|.||     .||        ||..||..|||||..|..|
BPUM_1379___c    576 AGTTTTCCCGTTTTGTTCAAAAG--------ACGGTGCACTTCCAGCGTA    617

BSNT_02470___    621 ATTCCATGAATGGGTGCAAATGGGCCACAGAGCAGCAGC-CTTACTGTTA    669
                     .|||.||.|.||||||||||||...|||||||||||||| ||| ||.|||
BPUM_1379___c    618 CTTCAATCAGTGGGTGCAAATGTCTCACAGAGCAGCAGCACTT-CTTTTA    666

BSNT_02470___    670 TTTGTATGGATTATTGTTGCCGCTGTT-CATGCTAT--TACTTCCTATAA    716
                     ||.||.|||||..|||||| ||.|||| |||||.||  .||.|  |||||
BPUM_1379___c    667 TTCGTCTGGATATTTGTTG-CGATGTTCCATGCCATGAAACAT--TATAA    713

BSNT_02470___    717 AGATCAAAAACAAATCTTTTGGGGTTGGATC---TCATGTCTTATTTTTA    763
                     |||.|||||.||..|.|.||..||.||||||   ||| |.|  |||.|.|
BPUM_1379___c    714 AGAACAAAAGCAGCTGTATTATGGATGGATCATTTCA-GCC--ATTCTCA    760

BSNT_02470___    764 TTACATTACAGGCACTGTCCGGTATTATGATC---GTATACACTGAACTC    810
                     |||||.|.||.||..|.||.|||.|.||| ||   ||||.|.|  |.|||
BPUM_1379___c    761 TTACACTTCAAGCGATTTCAGGTGTGATG-TCTGTGTATTCCC--AGCTC    807

BSNT_02470___    811 GCTCTGGGTTTTGCACTTGCCCACTCGTTCTTTATTGCCTGTCTGTTTGG    860
                     ||.||.||.|.|||.||.||.||.||.|||||||||.|||||.|||||||
BPUM_1379___c    808 GCACTAGGCTATGCGCTGGCTCATTCATTCTTTATTTCCTGTTTGTTTGG    857

BSNT_02470___    861 CGTTCTATGCTACTTCTTATTATTGATTGCTCGTTTCCGTTATGAATCC-    909
                     .||.||.||.|||||||...||.|.|||||.||.||....||||||..| 
BPUM_1379___c    858 AGTACTCTGTTACTTCTGCCTACTCATTGCCCGGTTTAAATATGAAAGCA    907

BSNT_02470___    910 ---AGGCAATC--ATAA    921
                        ||.||.||  ||||
BPUM_1379___c    908 AAGAGCCATTCAAATAA    924


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02470 and BPUM_1379

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
