Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02465 and BPUM_1374

See Amino acid alignment / Visit BSNT_02465 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:56
# Commandline: needle
#    -asequence dna-align/BSNT_02465___ylaM.1.24716.seq
#    -bsequence dna-align/BPUM_1374___gls.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02465___ylaM-BPUM_1374___gls.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02465___ylaM-BPUM_1374___gls.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02465___ylaM
# 2: BPUM_1374___gls
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 968
# Identity:     676/968 (69.8%)
# Similarity:   676/968 (69.8%)
# Gaps:          76/968 ( 7.9%)
# Score: 2259.5
# 
#
#=======================================

BSNT_02465___      1 ATGGTATGCCGGCATAATGATGAGCTTGAAGC-CTTAGT-GAAAAAGGCG     48
                     ||||.|||.||..|.|||||.|||||| .||| .||.|| |||.|| ||.
BPUM_1374___g      1 ATGGCATGTCGCGACAATGAAGAGCTT-CAGCGATTTGTAGAAGAA-GCA     48

BSNT_02465___     49 AAAAAAGTAACGGACA---AGGGGGAGGTAGCCAGCTATATTCCCGC-CT     94
                     ||||||||   ||.||   |.||..|.|||||...|||||||||.|| ||
BPUM_1374___g     49 AAAAAAGT---GGCCAAAGATGGTCAAGTAGCATCCTATATTCCTGCTCT     95

BSNT_02465___     95 TGGCAAAAGCTGAT-AAACACGACCTGTCAGTGGCGATTTATTATTCCAA    143
                     .||| |||||.||| |.|| .||..|.||.|||||..|.|||.||...|.
BPUM_1374___g     96 CGGC-AAAGCGGATCAGAC-GGATTTATCTGTGGCTGTGTATCATGTGAG    143

BSNT_02465___    144 TAATGTTTGTCTGTCAGCAGGTGACGTAGAAAAAACATTTACGCTTCAAA    193
                     ||||...||.|..||.||.||.||.|||||.|||..||||||||||||||
BPUM_1374___g    144 TAATACGTGCCACTCCGCTGGGGATGTAGATAAACGATTTACGCTTCAAA    193

BSNT_02465___    194 GTATATCGAAAGTCCTTTCCCTTGCTTTGGTGTTAATGGAATACGG--CA    241
                     |.||.||.|||||..|..|.||.||..|.|||.|....|||.|.||  ||
BPUM_1374___g    194 GCATTTCAAAAGTATTAGCACTGGCGCTTGTGCTCTCAGAAGAAGGGCCA    243

BSNT_02465___    242 AAGATAAGGTCTTT-AGTTATGTTGGACAGGAGCCGACCGGAGATCCGTT    290
                     |  |.||.|||||| |.|| |||||||||.||.||.||.|||||.|||||
BPUM_1374___g    244 A--AAAAAGTCTTTCAATT-TGTTGGACAAGAACCAACAGGAGACCCGTT    290

BSNT_02465___    291 TAATTCAATTATCAAGCTCGAAACAGTGAATCCAAGCAAGCCGTTAAATC    340
                     |||||||||.|||||.||.|||||||..|..||.|..||.|||.|.||||
BPUM_1374___g    291 TAATTCAATGATCAAACTGGAAACAGCCAGCCCGAATAAACCGCTGAATC    340

BSNT_02465___    341 CTATGATTAATGCCGGGGCATTGGTAGTGACAAGTCTGATAAGAGGA---    387
                     |.|||||||||||.|||||..|.|..||.||||||.|.||.||.|||   
BPUM_1374___g    341 CAATGATTAATGCAGGGGCGCTCGCCGTCACAAGTTTAATCAGGGGAGCG    390

BSNT_02465___    388 -----AGAA------------CGGTGAAAGAGAGACTTGATTATTTGCTT    420
                          ||||            |||                    ||||||
BPUM_1374___g    391 ACCCCAGAAGCTCAGCTGGGCCGG--------------------TTGCTT    420

BSNT_02465___    421 TCTTTTATCAGAAGGCTGACAAACAACCAAGAG-ATTACATACTGCCGGG    469
                     ...||.||.|||..|||..||||..| |||.|| ||||||||||||..||
BPUM_1374___g    421 AGCTTCATTAGAGAGCTTGCAAATGA-CAAAAGCATTACATACTGCAAGG    469

BSNT_02465___    470 AAGTGGCTGAATCTGAAT-----ACAGCACTTCAATGATTAATCGGGCAA    514
                     ||...||||..||.||||     |||     ||.||||||||.|||||.|
BPUM_1374___g    470 AAACCGCTGCGTCCGAATTTGAGACA-----TCCATGATTAACCGGGCGA    514

BSNT_02465___    515 TGTGCTATTATATGAAGCAGTACGGCATTTTTGAAGATG--ATGTAGAAG    562
                     |||||||||||||||||||.||  .|||.||...|||.|  |.|||||||
BPUM_1374___g    515 TGTGCTATTATATGAAGCAATA--TCATATTATTAGAGGGAACGTAGAAG    562

BSNT_02465___    563 CAGTAATGGATTTATACACGAAGCAATGCGCGATTGAGATGAACAGCTTG    612
                     .|||.|||||..|.||.|||||.|||||.||.||...|||||||||||||
BPUM_1374___g    563 AAGTCATGGACGTCTATACGAAACAATGTGCCATCATGATGAACAGCTTG    612

BSNT_02465___    613 GATTTAGCGAAAATCGGATCTGTATTTGCATTGAACGGCAGACATCCAGA    662
                     |||||.||||||||.|..|.|||.|||.||||..|||||||.||.|||||
BPUM_1374___g    613 GATTTGGCGAAAATTGCTTGTGTTTTTTCATTAGACGGCAGGCACCCAGA    662

BSNT_02465___    663 GACTGGGGAGCAAGTCATCTCAAAAGATGTCGCTAGAATTTGCAAAACAT    712
                     .||.||..|||||.|..|.||.||||||||||||||||||||.|||||.|
BPUM_1374___g    663 AACGGGAAAGCAAATTCTTTCGAAAGATGTCGCTAGAATTTGTAAAACCT    712

BSNT_02465___    713 TTATGGTGACGTGCGGAATGTACAATGCAAGCGGGGAATTCGCAATTAAG    762
                     ||||||||||||||||.|||||||||||.|||||.|||||.||.|||||.
BPUM_1374___g    713 TTATGGTGACGTGCGGCATGTACAATGCGAGCGGAGAATTTGCCATTAAC    762

BSNT_02465___    763 GTCGGAATTCCTGCGAAAAGCGGCGTATCCGGCGGGATTATGGGCATTTC    812
                     .|||||||||||||.||||||||.||.||.||.|||||||||||...|.|
BPUM_1374___g    763 ATCGGAATTCCTGCAAAAAGCGGTGTCTCAGGTGGGATTATGGGAGCTGC    812

BSNT_02465___    813 GCCTTACGATTTCGGGATCGGCATATTCGGCCCCGCATTAGACGAAAAAG    862
                     .||.||.|||||.||.|||||.||.|||||.||.||..|.||.|||||||
BPUM_1374___g    813 ACCATATGATTTTGGAATCGGTATCTTCGGTCCGGCTCTGGATGAAAAAG    862

BSNT_02465___    863 GGAACAGCATTGCAGGTGTAAAGCTTTTGGAAATAATGTCTGAGATGTAC    912
                     ||||.||.|||||.||..|.|||||..|.||..|.|||..|||.|..|||
BPUM_1374___g    863 GGAATAGTATTGCTGGGATTAAGCTGCTTGAGCTGATGAGTGAAAAATAC    912

BSNT_02465___    913 AGGCTGAGTATTTTTTAA    930
                     ..|.|||||||.||||||
BPUM_1374___g    913 GAGATGAGTATCTTTTAA    930


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