Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02463 and BPUM_1372
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_02463___ylaK.1.24716.seq
# -bsequence dna-align/BPUM_1372___phoH1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02463___ylaK-BPUM_1372___phoH1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02463___ylaK-BPUM_1372___phoH1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02463___ylaK
# 2: BPUM_1372___phoH1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1355
# Identity: 968/1355 (71.4%)
# Similarity: 968/1355 (71.4%)
# Gaps: 88/1355 ( 6.5%)
# Score: 3349.0
#
#
#=======================================
BSNT_02463___ 1 TTGAGTAAAATTTATGTGTTAGATACGAATGTGTTATTACAGGATCCTAA 50
|||||||||||||||||.||
BPUM_1372___p 1 ------------------------------GTGTTATTACAGGATCCGAA 20
BSNT_02463___ 51 CGCGATATTTTCTTTTGAAGAAAATGAGGTTGTCATCCCTGCTGTCGTTT 100
..|.||.|||||.||||||||.||.||.||.|||||.||.||.||.||.|
BPUM_1372___p 21 TTCAATCTTTTCATTTGAAGACAACGAAGTCGTCATACCAGCCGTTGTGT 70
BSNT_02463___ 101 TAGAAGAGGTTGATTCAAAAAAACGGTATATGGACGAAGTTGGGAGGAAT 150
|||||||.||.||.||||||||..|.|||||||||||.|||||....|||
BPUM_1372___p 71 TAGAAGAAGTAGACTCAAAAAAGAGATATATGGACGAGGTTGGACAAAAT 120
BSNT_02463___ 151 GCAAGGCACGTATCTAAG-CTAATCGATGCGCTAAGA-CAAAAGGGCAGG 198
||..|||.|||.|| |.| ||||||||.|...||||| |.|||||| |..
BPUM_1372___p 121 GCCCGGCGCGTCTC-ACGCCTAATCGACGGTTTAAGATCGAAAGGG-AAA 168
BSNT_02463___ 199 CTGCATGAGCATGTACCGCTTGACACCGGC----GGCACACTGAGAATTG 244
||||||||..|..|..|.||.|| |.| ||.||||||.|.||||
BPUM_1372___p 169 CTGCATGAAAAAATTACACTAGA----GTCAAAAGGGACACTGCGCATTG 214
BSNT_02463___ 245 AACTGAATCATCGTTCGTTTCACCAGCTGCAAGAGATCTTTATTGAAAAG 294
||||||||||.||.||.|||||..||||.|||||.||.|||||||||||.
BPUM_1372___p 215 AACTGAATCACCGCTCTTTTCATGAGCTTCAAGAAATTTTTATTGAAAAA 264
BSNT_02463___ 295 ACGAACGATAATCGCATATTAGCCGTTGCGAAAAACTTGAGCCTAGAGGA 344
||||||||||||||.|||||.||.||.|||||||||||.|||.|||||||
BPUM_1372___p 265 ACGAACGATAATCGAATATTGGCAGTCGCGAAAAACTTAAGCTTAGAGGA 314
BSNT_02463___ 345 AGAAACCAAGGAAAATGGCAGGCCGGTTATCCTCGTCAGTAAGGATGTAC 394
||||||.|||....|||||.||||.|||||..|.|||||.||||||||.|
BPUM_1372___p 315 AGAAACTAAGCCTCATGGCCGGCCTGTTATTTTGGTCAGCAAGGATGTGC 364
BSNT_02463___ 395 TGGTCAGGGTTAAAGCCGACGCAATCGGACTGCTTGCTGAAGATTTCTTG 444
|.||..||||.|||||.||.||.||.||.||.|..||.|||||.|||||.
BPUM_1372___p 365 TAGTGCGGGTAAAAGCGGATGCTATAGGGCTTCAAGCAGAAGACTTCTTA 414
BSNT_02463___ 445 AATGACCGGGTTGTGGACAATGATGAAATGTACAGCGGCTATAA--AGAT 492
|.||||||.|||.||.|.|||||.||.||..|.|..||||||.| ||.|
BPUM_1372___p 415 AGTGACCGTGTTTTGCAAAATGAAGACATCGATAATGGCTATCATGAGCT 464
BSNT_02463___ 493 TTATATATCAGCC--AGCAGCTG--TTCAGCTCTTTTTACGGGAAAAATC 538
|||.|| ||.|.| ||||..|| |.|| |||||...|.||||||
BPUM_1372___p 465 TTACAT-TCCGACTGAGCAATTGAATACA-----TTTTATAAGCAAAATC 508
BSNT_02463___ 539 AAATTTCAGTAAACGATGTGA-AACAGCATGCGTTTTATCCGAATCAGTT 587
.|.|..||.||||.||.||.| ||..||| .|.||..|.||..||||.||
BPUM_1372___p 509 GATTACCAATAAAAGAGGTCACAAGTGCA-CCATTCAACCCTCATCAATT 557
BSNT_02463___ 588 TGCTTTAATGAAGG---ATGAGCTAGGAGGGTCCTCCTCGGCAGTCGGAA 634
||...|.||||||| |||| |||.|| .||.||..|.||||
BPUM_1372___p 558 TGTCATCATGAAGGGAAATGA---AGGTGG------TTCTGCTTTAGGAA 598
BSNT_02463___ 635 TTGC-AGA-CAAAACCGGAACGGTAT-TAAAAAGACTCGTATTTGATGAT 681
||| .|| ||||| ||.|..|.|| |||||.|.|||||.|.||||.|.
BPUM_1372___p 599 -TGCTTGATCAAAA--GGCAGAGCATGTAAAACGGCTCGTTTATGATCAA 645
BSNT_02463___ 682 GAACATATATGGGGAATCAGGCCGAAAAATGTACAGCAGACAATGGCTTT 731
||.||.||.|||||||||.|.||.||.|||||.||||||||.|||||..|
BPUM_1372___p 646 GAGCACATTTGGGGAATCCGTCCAAAGAATGTCCAGCAGACGATGGCACT 695
BSNT_02463___ 732 AGA---GCTTTTGCTGCGGGAAGATATTCCGCTTGTCACCCTGATCGGAA 778
.|| ||||||||..|| .||.||||||||.||.||.|||||.||||
BPUM_1372___p 696 CGAGCTGCTTTTGCGACG---TGACATTCCGCTCGTGACACTGATTGGAA 742
BSNT_02463___ 779 AAGCAGGAACCGGCAAAAC---GCTCTTAACTTTGGCGGCAGGGCTATTA 825
||||.||.||.||.||||| ||| |..|||| ||.||.||..||.|.
BPUM_1372___p 743 AAGCGGGGACTGGTAAAACATTGCT-TGCACTT--GCTGCCGGATTAATG 789
BSNT_02463___ 826 CAGACAGAAGACTTGGGAATATATAAAAAGCTGGTTGTCGCAAGGCCGAT 875
||||||||.|||.|.||.||.|.|||||||.||.|.||.||..|..|.||
BPUM_1372___p 790 CAGACAGAGGACCTCGGTATGTTTAAAAAGTTGATCGTGGCGCGCTCCAT 839
BSNT_02463___ 876 TGTTCCTGTTGGCAAGGACATCGGGTATTTGCCAGGTGAAAAAGAGGAAA 925
.||.||||||||.||.||.|||||.|||||||||||.|||||.||.||||
BPUM_1372___p 840 CGTGCCTGTTGGGAAAGATATCGGATATTTGCCAGGAGAAAAGGAAGAAA 889
BSNT_02463___ 926 AGCTAAAGCCTTGGATGCAGCCGATTTTTGACAACTTAGAGTTTCTGTTT 975
||||.|..||.||||||||||||||.|.|||||||.||||||||.|.|||
BPUM_1372___p 890 AGCTCAGACCATGGATGCAGCCGATCTATGACAACCTAGAGTTTTTATTT 939
BSNT_02463___ 976 AATGCAAAAAAACCAGGGGAGCTTGATGCTATTTTGGCGGGAATTGGCTC 1025
|||.|||||||.||.||.|||||||||||.|||||||||||||||||.||
BPUM_1372___p 940 AATACAAAAAAGCCGGGTGAGCTTGATGCGATTTTGGCGGGAATTGGATC 989
BSNT_02463___ 1026 AATTCAGGTAGAGGCGCTGACTTATATCAGAGGGAGAAGCATTCCAGATC 1075
.|||||.||.||.||..||||.||.||..|.||.|||||.||.||.||||
BPUM_1372___p 990 TATTCAAGTCGAAGCATTGACGTACATTCGGGGAAGAAGTATCCCTGATC 1039
BSNT_02463___ 1076 AATTTATTATCATTGATGAAGCGCAAAATTTGACCAGGCATGAGGTGAAA 1125
|||||||||||||||||||.|||||.|||||.||.|.|||.|||||||||
BPUM_1372___p 1040 AATTTATTATCATTGATGAGGCGCAGAATTTAACAAAGCACGAGGTGAAA 1089
BSNT_02463___ 1126 ACGTTGCTGACGAGAGTCGGTGAAGGCAGTAAAATTGTCTTAATGGGTGA 1175
||.||..|.|||.|||||||.||.||.|||||||||||..|.|||||.||
BPUM_1372___p 1090 ACATTATTAACGCGAGTCGGAGAGGGAAGTAAAATTGTGCTGATGGGAGA 1139
BSNT_02463___ 1176 CCCTGAACAAATTGATCACCCATATTTAGACAGTCTGAACAATGGTTTGG 1225
.||.||.||.|||||||||||.|||||||||||..|.||.|||||..|..
BPUM_1372___p 1140 TCCAGAGCAGATTGATCACCCTTATTTAGACAGCTTAAATAATGGGCTTA 1189
BSNT_02463___ 1226 CCTATGTGGTTGAGCGGTTTAAAGGACAACCCATCTCAGG-CAGCGTGAA 1274
|.|||||..|.||||||||.|||||.||.|..||.||.|| || .||.||
BPUM_1372___p 1190 CGTATGTCATCGAGCGGTTCAAAGGGCAGCAAATATCTGGACA-TGTCAA 1238
BSNT_02463___ 1275 GCTGTTAAAAGGTGAGAGATCAGGTCTCGCCCAGCTCGCAGCTGATTTGC 1324
|||..|.|||||.||.||.||.||.||.||.|||||.||.||||||||||
BPUM_1372___p 1239 GCTTGTCAAAGGAGAAAGGTCTGGACTTGCACAGCTTGCTGCTGATTTGC 1288
BSNT_02463___ 1325 TGTAA 1329
|.||.
BPUM_1372___p 1289 TATAG 1293
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