Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02462 and BPUM_1371
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_02462___ylaJ.1.24716.seq
# -bsequence dna-align/BPUM_1371___ylaJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02462___ylaJ-BPUM_1371___ylaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02462___ylaJ-BPUM_1371___ylaJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02462___ylaJ
# 2: BPUM_1371___ylaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity: 430/697 (61.7%)
# Similarity: 430/697 (61.7%)
# Gaps: 146/697 (20.9%)
# Score: 1177.0
#
#
#=======================================
BSNT_02462___ 1 GTGCGA--ATTCTTTTCATT----ATCGTAC-AGCTGACACTTATCCTGT 43
.||||| |||.||..|||| ||.||.| ||| || |.||.||||
BPUM_1371___y 1 ATGCGACTATTTTTGACATTATTCATGGTTCAAGC---CA-TCATGCTGT 46
BSNT_02462___ 44 ---CCGCTTGTGCCTATCAACAAGGAAAACAG---GGCCAGAATGTTGAA 87
.|||||| |.|.||.| |||||||.|| || ||| ||.|
BPUM_1371___y 47 TAGGCGCTTG---CCAGCAGC-AGGAAAAGAGTGAGG-CAG-----TGGA 86
BSNT_02462___ 88 AAAGAATCAACAAGA-------CAGCA-GGAGACTAAACCGATTCACGTA 129
.||| ||||| ||||| |.|| ||| ||.| ||.
BPUM_1371___y 87 CAAG------CAAGATGGACGCCAGCACGTAG--TAA---GAGT---GTC 122
BSNT_02462___ 130 AAGGACACAACTCAAGAAACAAAAGA-CAATGGAACAAG----------A 168
| ||..|.||| |||| |||||| |||| |||| .
BPUM_1371___y 123 A--GATTCCACT-AAGA---AAAAGACCAAT----CAAGCTAGGTCATCC 162
BSNT_02462___ 169 ACGGATATTGCCAAGCATCTTGTCAGCGTTGCTGAAAAAAACC------C 212
||.|||.|.||..||||||||||||..|| ||.|.|.| |
BPUM_1371___y 163 ACAGATGTCGCGCAGCATCTTGTCAAAGT------AACAGAGCACGTAGC 206
BSNT_02462___ 213 CGACGTCAAGGATGCAACAGCCGTTGTGCTGGGGGGTTATGCTGTTGTTG 262
.||.||.||.||||||||.||.||.||..|.||..|.|||||.|||||||
BPUM_1371___y 207 AGATGTTAATGATGCAACGGCAGTCGTCATCGGCCGCTATGCCGTTGTTG 256
BSNT_02462___ 263 GGATTGATGTCGATGATACTTTGGACAGAAGCAAAGTGGAAACCATTAAA 312
|.||||||||..|.|||..|||.||.|||||||||||.||||||||||||
BPUM_1371___y 257 GTATTGATGTAAAAGATGATTTAGATAGAAGCAAAGTAGAAACCATTAAA 306
BSNT_02462___ 313 TATTCTGTAGCTCAGGCGCTAAAGAATGATCGATATGGCGCCAACGCAGT 362
|||||.||.||..|.|||||.||.|||||||.|.|.||.||.||.||.||
BPUM_1371___y 307 TATTCAGTTGCAAAAGCGCTGAAAAATGATCCAGAAGGTGCGAATGCTGT 356
BSNT_02462___ 363 AGTCATTGCTGATCCCGATACGGTAGGCCGCCTTCGCGAAATGAGCAGAG 412
.||..|.||||||||.|||||.||..||||..|....||||||.|.|.||
BPUM_1371___y 357 TGTGGTCGCTGATCCGGATACAGTCAGCCGGTTAAAAGAAATGGGTAAAG 406
BSNT_02462___ 413 AAAT--CAGCGAGG--GCCATCCGGTAACAGGTATACTGGATGAATTAGC 458
|||| .||| ||| || ||.||.|..||.||..||||||||.||||
BPUM_1371___y 407 AAATACAAGC-AGGACGC---CCTGTCAGTGGGATTATGGATGAACTAGC 452
BSNT_02462___ 459 TGCAATTGTCGGCCGAGTGCTTCCCGAAGTGCCTAACGATGTGATTGACA 508
.||.|||||||||||.||..|.||.||..||||.| || |
BPUM_1371___y 453 CGCCATTGTCGGCCGCGTAATGCCAGAGATGCCAA-----------GA-A 490
BSNT_02462___ 509 ATGAA---GA-CGAACCGC-AAACAAAGCAGCAAAATGACCAATTAAATA 553
||||| || || |||| |||||.|.| ||| |||.|.||..
BPUM_1371___y 491 ATGAAATTGATCG--CCGCGAAACAGATC--CAA------CAAATGAACC 530
BSNT_02462___ 554 GAA--AACAGC---AACAGGAAATG--------------GA-GAAGGAGC 583
||| |.|||| |||| ||||| || ||| .|.|
BPUM_1371___y 531 GAATGATCAGCTCAAACA--AAATGATCAAAAGAGGTTAGACGAA-CATC 577
BSNT_02462___ 584 AAAACGATCAATCTGATCATCATATGAAAAAGAACAACAATGACTAA 630
|||||||||||||..|.|||||||||||..||||.| |||.|
BPUM_1371___y 578 AAAACGATCAATCAAACCATCATATGAATCAGAAGA--AATAA---- 618
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