Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02455 and BPUM_1366
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_02455___ylaE.1.24716.seq
# -bsequence dna-align/BPUM_1366___ylaE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02455___ylaE-BPUM_1366___ylaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02455___ylaE-BPUM_1366___ylaE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02455___ylaE
# 2: BPUM_1366___ylaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 797
# Identity: 362/797 (45.4%)
# Similarity: 362/797 (45.4%)
# Gaps: 346/797 (43.4%)
# Score: 718.5
#
#
#=======================================
BSNT_02455___ 1 ATGAAGAAAACATTTGTAAAAAAAGCTATGTTAACGACTGCCGCAATGAC 50
||||||||.| .|||| |||.| |.||
BPUM_1366___y 1 ATGAAGAAGA-TTTTG-------AGCAA----ATCG-------------- 24
BSNT_02455___ 51 CTCAGCT--------------GCT----CTATTA-----ACGTTC----- 72
||||||| ||| |||||| ||.|||
BPUM_1366___y 25 CTCAGCTCTGTTGTATTTTTCGCTTTAGCTATTATTCTTACTTTCACAAC 74
BSNT_02455___ 73 ----GGTCCTGATGCAGCCAGC-------GCAA-----AAACACCGGTTG 106
|.||||| .||.||| |||| ||| || |
BPUM_1366___y 75 AGTAGCTCCTG----GGCAAGCAAGTGCTGCAACTTTCAAA----GG--G 114
BSNT_02455___ 107 ATAACACTGCTGTTCAACTCCAGCATCAGGCGAG-CACTAACGAA----- 150
|| |.||.||.| .|||||.|| || ||.|||.|||
BPUM_1366___y 115 AT-----TCCTTTTGA---GCAGCAACA----AGTCATTAAAGAATTATT 152
BSNT_02455___ 151 ----------GATC------TCAATACATTCATTGATAT-ATTAAATCAA 183
||.| ||| |||||| | ||.||.|| |
BPUM_1366___y 153 GGAGAAAAACGAGCGTGTCATCA--ACATTC-------TCATCAACTC-A 192
BSNT_02455___ 184 TGTATTTACGA--ACAAGACGGTGTATATTA---TTTTGACAGCGAAAAA 228
|.|.||.|.|| ||||.| |.|| .|||||.....|||||
BPUM_1366___y 193 TTTGTTGAGGAAGACAACA--------ACTACACATTTGATGTAAAAAAA 234
BSNT_02455___ 229 GCTGTCGAGTTAGGAATGACAAAAGAAGAGGCTCAGGTAATTGCTACACT 278
|||||.|||.|.|||.|.||..|||||||.|| ||..|.||||
BPUM_1366___y 235 GCTGTTGAGCTCGGACTAACTGAAGAAGAAGC---GGCGACTGCT----- 276
BSNT_02455___ 279 CTGGGAATCGACATCAGAATTTTT--------CAGCATTGTT-TCACAAT 319
||.| ||||.|| |||| |||| |.|||||
BPUM_1366___y 277 ---------GAGA----AATTCTTAGATCGCGCAGC--TGTTCTGACAAT 311
BSNT_02455___ 320 --------GTGTGTA---TCTCGAGGATGGAAATTACAAA-------TTT 351
|||.| | ||.|||..|..||||....||| |||
BPUM_1366___y 312 CGTTTTCAGTGAG-AGCGTCACGAAAAACGAAAAAGGAAAATTGGTTTTT 360
BSNT_02455___ 352 GATACAGAAAAAGCAGTTGAACTTGG-CTTCACAGAAAAAGAAGCACTTG 400
|||.|||..|||||.||||||||||| ||| |||.||.||||||||..|.
BPUM_1366___y 361 GATGCAGCGAAAGCTGTTGAACTTGGTCTT-ACAAAAGAAGAAGCAGCTA 409
BSNT_02455___ 401 CACTTGAACAATTTTTCTCCGCTGTTTCTCTCA------AGATTCACATT 444
.|.|||||.| |||||||...||| ||| |||
BPUM_1366___y 410 AATTTGAAAA----------GCTGTTTAAATCAGTGATCAGA-----ATT 444
BSNT_02455___ 445 CTTCAAGCAGCCATTGTGCTACAAGATGATG----TGT----------AC 480
||.| ||..|||| |.||||| ||| |.
BPUM_1366___y 445 ------GCTG--ATCTTGCT----GGTGATGCACTTGTTTTAGACAAAAA 482
BSNT_02455___ 481 AGCTA----------TGAT------------AAA-------GACGCAGCG 501
||.|| |||| ||| ||..||||.
BPUM_1366___y 483 AGGTAATGTTGTCATTGATTCAAAAATCGCAAAAGGTATTGGATTCAGCT 532
BSNT_02455___ 502 CTAC--AAGCAGGTG----CAACGCCACTGCAA--GCTGACGTTTATGAA 543
|||| ||..|..|| |||| ||| ||||| ||
BPUM_1366___y 533 CTACTGAATTACTTGTTTTCAAC-------CAAATGCTGA--------AA 567
BSNT_02455___ 544 AAACTCTTCAGTGCCCTGTCACAAGAACAGCTTGCCGCTATT-------- 585
|||.| |||| ||||| ||.|||
BPUM_1366___y 568 AAAAT--------CCCT----CAAGA----------GCAATTAAAATCAG 595
BSNT_02455___ 586 --TACGATATGATTCA---TCCCCAGGCTTAA--------------- 612
||.|||...||||| | |||.||
BPUM_1366___y 596 TCTATGATGCAATTCAAATT------GCTAAAGAAAAATTAAGCTAA 636
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