Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02432 and BPUM_1357
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_02432___pdhC.1.24716.seq
# -bsequence dna-align/BPUM_1357___pdhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02432___pdhC-BPUM_1357___pdhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02432___pdhC-BPUM_1357___pdhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02432___pdhC
# 2: BPUM_1357___pdhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity: 1125/1357 (82.9%)
# Similarity: 1125/1357 (82.9%)
# Gaps: 41/1357 ( 3.0%)
# Score: 4717.0
#
#
#=======================================
BSNT_02432___ 1 GTGGCATTTGAATTTAAACTTCCAGATATCGGGGAAGGTATCCACGAAGG 50
|||||||||||||||||||||||.||.|||||.|||||||||||||||||
BPUM_1357___p 1 GTGGCATTTGAATTTAAACTTCCGGACATCGGAGAAGGTATCCACGAAGG 50
BSNT_02432___ 51 CGAAATCGTAAAATGGTTTGTCAAGCCTAACGACGAGGTAGACGAAGATG 100
.||.|||||.||.||||||||.||.||.||||||||..|..|.|||||||
BPUM_1357___p 51 TGAGATCGTTAAGTGGTTTGTAAAACCAAACGACGAAATTAATGAAGATG 100
BSNT_02432___ 101 ATGTACTGGCTGAAGTCCAAAATGATAAAGCAGTAGTAGAAATTCCTTCA 150
|.||..|.||.||.||.|||||.|||||||||||.|||||||||||||||
BPUM_1357___p 101 ACGTTTTAGCAGAGGTACAAAACGATAAAGCAGTTGTAGAAATTCCTTCA 150
BSNT_02432___ 151 CCTGTTAAAGGAAAAGTATTAGAATTAAAAGTTGAAGAGGGAACGGTTGC 200
||||||||||||||||||||||||||||||||||||||||||||.|||||
BPUM_1357___p 151 CCTGTTAAAGGAAAAGTATTAGAATTAAAAGTTGAAGAGGGAACAGTTGC 200
BSNT_02432___ 201 AACTGTTGGACAAACGATTATTACGTTTGATGCACCTGGTTACGAAGATC 250
||||||.||||||||.||.|||||||||||||||||||||||||||.|||
BPUM_1357___p 201 AACTGTAGGACAAACAATCATTACGTTTGATGCACCTGGTTACGAAAATC 250
BSNT_02432___ 251 TTCAATTTAAAGGCAGCGACGAGTCTGACGATGCGAAAACTGAAGCACAA 300
|||||||||||||||||||.||....|.|||.||.|||||||||||.||.
BPUM_1357___p 251 TTCAATTTAAAGGCAGCGAAGAAGAAGGCGAAGCAAAAACTGAAGCTCAG 300
BSNT_02432___ 301 GTTCA--GTCAACTGCAGAAGCTGGAAAAGACGTTGC-------GAAAGA 341
||.|| || |||||.||||||||.||.|| || ||||||
BPUM_1357___p 301 GTACAAGGT--ACTGCTGAAGCTGGTAACGA----GCCAGAGAAGAAAGA 344
BSNT_02432___ 342 AG-AG--CAAGCTCAAGAGCCTGCAAAAGCTACTGGCGCAGG-ACAGCAG 387
|| || |||| ||||..|.|||..|||.||||..||||| .|| ||.
BPUM_1357___p 345 AGTAGCACAAG---AAGAAGCGGCAGCAGCAACTGATGCAGGCGCA-CAA 390
BSNT_02432___ 388 GATCAAGCTGAAGTTGACCCGAACAAACGCGTGATCGCTATGCCTTCCGT 437
||.||||..||.|.|||.||.|||||||||||.|||||||||||.||.||
BPUM_1357___p 391 GAGCAAGTAGATGCTGATCCAAACAAACGCGTTATCGCTATGCCATCTGT 440
BSNT_02432___ 438 ACGTAAATATGCTCGTGAAAAAGGCGTAGACATCCGTAAGGTTACTGGTT 487
||||||||||||.||.|||||||||.|.||.||....||.|||.|.||||
BPUM_1357___p 441 ACGTAAATATGCCCGCGAAAAAGGCATTGAAATTTACAAAGTTGCAGGTT 490
BSNT_02432___ 488 CAGGCAACAACGGACGTGTTGTAAAAGAAGATATCGACAGCTTTGTAAAC 537
|.||.||.|||||||||||..||||||||||||||||||||||.||.||.
BPUM_1357___p 491 CTGGTAAAAACGGACGTGTGTTAAAAGAAGATATCGACAGCTTCGTTAAT 540
BSNT_02432___ 538 GGAGG------AGCGCAAGAAGCTGCACCGCAAGAAACAGC------TGC 575
||.|| |.|.||||||||.||.||.|||| |||| |||
BPUM_1357___p 541 GGTGGTTCTGCAACTCAAGAAGCAGCGCCTCAAG---CAGCTGAAAGTGC 587
BSNT_02432___ 576 ACCACAAGAAACAGCTGCTAAACCGGCTGCTGCA---CCAGCTCCAGAGG 622
|..|.|||||.|||||.|||||.||||.||.||| ||||.||..||.|
BPUM_1357___p 588 AAAAGAAGAAGCAGCTCCTAAAGCGGCAGCAGCAGCTCCAGTTCTTGAAG 637
BSNT_02432___ 623 GCGAATTCCCAGAAACACGCGAAAAAATGAGCGGTATCCGTAAAGCAATT 672
|.||||||||||||||.|||||.|||||||||||||||||||||||.||.
BPUM_1357___p 638 GAGAATTCCCAGAAACTCGCGAGAAAATGAGCGGTATCCGTAAAGCGATC 687
BSNT_02432___ 673 GCAAAAGCGATGGTTAACTCTAAACACACTGCTCCTCATGTAACGTTAAT 722
||.|||||.|||||.||||||||.||.||.||||||||.|||||.|||||
BPUM_1357___p 688 GCGAAAGCAATGGTGAACTCTAAGCATACAGCTCCTCACGTAACATTAAT 737
BSNT_02432___ 723 GGACGAAGTGGACGTAACAAACCTTGTTGCACATCGTAAACAGTTCAAAC 772
|||.||||||||.|||||.|||||||||||.|||||||||||.|||||||
BPUM_1357___p 738 GGATGAAGTGGATGTAACGAACCTTGTTGCTCATCGTAAACAATTCAAAC 787
BSNT_02432___ 773 AAGTTGCTGCTGATCAAGGAATCAAGCTGACTTACTTGCCTTACGTTGTA 822
|||||||.||||||||||||||||||.|.|||||||||||||||||||||
BPUM_1357___p 788 AAGTTGCAGCTGATCAAGGAATCAAGTTAACTTACTTGCCTTACGTTGTA 837
BSNT_02432___ 823 AAAGCTCTTACATCTGCACTGAAAAAATTCCCTGTTTTAAACACGTCAAT 872
|||||||||||.|||||..|||||||.|.|||.||..|.|||||.||.||
BPUM_1357___p 838 AAAGCTCTTACTTCTGCTTTGAAAAAGTACCCAGTACTTAACACTTCTAT 887
BSNT_02432___ 873 TGACGATAAAACAGATGAAGTCATCCAAAAACATTACTTCAACATCGGTA 922
.||.|||||||||||||||||..|.|||||||||||||.|||||||||.|
BPUM_1357___p 888 CGATGATAAAACAGATGAAGTTGTTCAAAAACATTACTACAACATCGGAA 937
BSNT_02432___ 923 TCGCTGCTGACACTGAAAAAGGCTTGCTTGTACCGGTTGTGAAAAATGCA 972
|.||.|||||.||||||||||||||||||||.||.|||||||||||||||
BPUM_1357___p 938 TTGCAGCTGATACTGAAAAAGGCTTGCTTGTTCCAGTTGTGAAAAATGCA 987
BSNT_02432___ 973 GATCGTAAATCTGTCTTTGAAATTTCTGATGAGATCAATGGCCTTGCAAC 1022
|||||.|||.|..|.||.|||.|.|||.|.||.|||||.|..||||||||
BPUM_1357___p 988 GATCGCAAAGCAATTTTCGAAGTATCTAACGAAATCAACGAGCTTGCAAC 1037
BSNT_02432___ 1023 AAAAGCTCGTGAAGGCAAGCTTGCTCCAGCTGAAATGAAAGGCGCATCTT 1072
||||||.|||||.||.||..|.||||||||||||||||||||.|||||||
BPUM_1357___p 1038 AAAAGCACGTGATGGTAAATTGGCTCCAGCTGAAATGAAAGGTGCATCTT 1087
BSNT_02432___ 1073 GCACAATTACAAACATCGGTTCTGCCGGCGGACAATGGTTCACTCCGGTT 1122
|||||||.|||||||||||||||||.||.|||||||||||.|||||.|||
BPUM_1357___p 1088 GCACAATCACAAACATCGGTTCTGCTGGTGGACAATGGTTTACTCCAGTT 1137
BSNT_02432___ 1123 ATCAACCATCCAGAAGTTGCGATTCTTGGTATCGGACGCATTGCAGAAAA 1172
||||||||.||||||||.|||||.||||||||.||.||.||.||.|||||
BPUM_1357___p 1138 ATCAACCACCCAGAAGTAGCGATCCTTGGTATTGGCCGTATCGCTGAAAA 1187
BSNT_02432___ 1173 AGCGATTGTTCGTGATGGCGAAATCGTAGCAGCTCCAGTCTTAGCTCTTT 1222
||||.||||||||||||||||||||||.||||||||||||||||||||||
BPUM_1357___p 1188 AGCGGTTGTTCGTGATGGCGAAATCGTTGCAGCTCCAGTCTTAGCTCTTT 1237
BSNT_02432___ 1223 CTCTCAGCTTCGACCACCGTATGATCGACGGAGCAACTGCGCAAAATGCA 1272
|.||.|||||.|||||||||||||||||||||||.||||||||||||||.
BPUM_1357___p 1238 CCCTAAGCTTTGACCACCGTATGATCGACGGAGCTACTGCGCAAAATGCC 1287
BSNT_02432___ 1273 TTAAATCACATCAAGCGTTTACTGAACGATCCACAATTAATTTTAATGGA 1322
.|.||.|||||||||||||||.||||.|||||||||||||||||||||||
BPUM_1357___p 1288 CTTAACCACATCAAGCGTTTATTGAATGATCCACAATTAATTTTAATGGA 1337
BSNT_02432___ 1323 GGCGTAA 1329
|||||||
BPUM_1357___p 1338 GGCGTAA 1344
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