Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02432 and BPUM_1357

See Amino acid alignment / Visit BSNT_02432 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_02432___pdhC.1.24716.seq
#    -bsequence dna-align/BPUM_1357___pdhC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02432___pdhC-BPUM_1357___pdhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02432___pdhC-BPUM_1357___pdhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02432___pdhC
# 2: BPUM_1357___pdhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity:    1125/1357 (82.9%)
# Similarity:  1125/1357 (82.9%)
# Gaps:          41/1357 ( 3.0%)
# Score: 4717.0
# 
#
#=======================================

BSNT_02432___      1 GTGGCATTTGAATTTAAACTTCCAGATATCGGGGAAGGTATCCACGAAGG     50
                     |||||||||||||||||||||||.||.|||||.|||||||||||||||||
BPUM_1357___p      1 GTGGCATTTGAATTTAAACTTCCGGACATCGGAGAAGGTATCCACGAAGG     50

BSNT_02432___     51 CGAAATCGTAAAATGGTTTGTCAAGCCTAACGACGAGGTAGACGAAGATG    100
                     .||.|||||.||.||||||||.||.||.||||||||..|..|.|||||||
BPUM_1357___p     51 TGAGATCGTTAAGTGGTTTGTAAAACCAAACGACGAAATTAATGAAGATG    100

BSNT_02432___    101 ATGTACTGGCTGAAGTCCAAAATGATAAAGCAGTAGTAGAAATTCCTTCA    150
                     |.||..|.||.||.||.|||||.|||||||||||.|||||||||||||||
BPUM_1357___p    101 ACGTTTTAGCAGAGGTACAAAACGATAAAGCAGTTGTAGAAATTCCTTCA    150

BSNT_02432___    151 CCTGTTAAAGGAAAAGTATTAGAATTAAAAGTTGAAGAGGGAACGGTTGC    200
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
BPUM_1357___p    151 CCTGTTAAAGGAAAAGTATTAGAATTAAAAGTTGAAGAGGGAACAGTTGC    200

BSNT_02432___    201 AACTGTTGGACAAACGATTATTACGTTTGATGCACCTGGTTACGAAGATC    250
                     ||||||.||||||||.||.|||||||||||||||||||||||||||.|||
BPUM_1357___p    201 AACTGTAGGACAAACAATCATTACGTTTGATGCACCTGGTTACGAAAATC    250

BSNT_02432___    251 TTCAATTTAAAGGCAGCGACGAGTCTGACGATGCGAAAACTGAAGCACAA    300
                     |||||||||||||||||||.||....|.|||.||.|||||||||||.||.
BPUM_1357___p    251 TTCAATTTAAAGGCAGCGAAGAAGAAGGCGAAGCAAAAACTGAAGCTCAG    300

BSNT_02432___    301 GTTCA--GTCAACTGCAGAAGCTGGAAAAGACGTTGC-------GAAAGA    341
                     ||.||  ||  |||||.||||||||.||.||    ||       ||||||
BPUM_1357___p    301 GTACAAGGT--ACTGCTGAAGCTGGTAACGA----GCCAGAGAAGAAAGA    344

BSNT_02432___    342 AG-AG--CAAGCTCAAGAGCCTGCAAAAGCTACTGGCGCAGG-ACAGCAG    387
                     || ||  ||||   ||||..|.|||..|||.||||..||||| .|| ||.
BPUM_1357___p    345 AGTAGCACAAG---AAGAAGCGGCAGCAGCAACTGATGCAGGCGCA-CAA    390

BSNT_02432___    388 GATCAAGCTGAAGTTGACCCGAACAAACGCGTGATCGCTATGCCTTCCGT    437
                     ||.||||..||.|.|||.||.|||||||||||.|||||||||||.||.||
BPUM_1357___p    391 GAGCAAGTAGATGCTGATCCAAACAAACGCGTTATCGCTATGCCATCTGT    440

BSNT_02432___    438 ACGTAAATATGCTCGTGAAAAAGGCGTAGACATCCGTAAGGTTACTGGTT    487
                     ||||||||||||.||.|||||||||.|.||.||....||.|||.|.||||
BPUM_1357___p    441 ACGTAAATATGCCCGCGAAAAAGGCATTGAAATTTACAAAGTTGCAGGTT    490

BSNT_02432___    488 CAGGCAACAACGGACGTGTTGTAAAAGAAGATATCGACAGCTTTGTAAAC    537
                     |.||.||.|||||||||||..||||||||||||||||||||||.||.||.
BPUM_1357___p    491 CTGGTAAAAACGGACGTGTGTTAAAAGAAGATATCGACAGCTTCGTTAAT    540

BSNT_02432___    538 GGAGG------AGCGCAAGAAGCTGCACCGCAAGAAACAGC------TGC    575
                     ||.||      |.|.||||||||.||.||.||||   ||||      |||
BPUM_1357___p    541 GGTGGTTCTGCAACTCAAGAAGCAGCGCCTCAAG---CAGCTGAAAGTGC    587

BSNT_02432___    576 ACCACAAGAAACAGCTGCTAAACCGGCTGCTGCA---CCAGCTCCAGAGG    622
                     |..|.|||||.|||||.|||||.||||.||.|||   ||||.||..||.|
BPUM_1357___p    588 AAAAGAAGAAGCAGCTCCTAAAGCGGCAGCAGCAGCTCCAGTTCTTGAAG    637

BSNT_02432___    623 GCGAATTCCCAGAAACACGCGAAAAAATGAGCGGTATCCGTAAAGCAATT    672
                     |.||||||||||||||.|||||.|||||||||||||||||||||||.||.
BPUM_1357___p    638 GAGAATTCCCAGAAACTCGCGAGAAAATGAGCGGTATCCGTAAAGCGATC    687

BSNT_02432___    673 GCAAAAGCGATGGTTAACTCTAAACACACTGCTCCTCATGTAACGTTAAT    722
                     ||.|||||.|||||.||||||||.||.||.||||||||.|||||.|||||
BPUM_1357___p    688 GCGAAAGCAATGGTGAACTCTAAGCATACAGCTCCTCACGTAACATTAAT    737

BSNT_02432___    723 GGACGAAGTGGACGTAACAAACCTTGTTGCACATCGTAAACAGTTCAAAC    772
                     |||.||||||||.|||||.|||||||||||.|||||||||||.|||||||
BPUM_1357___p    738 GGATGAAGTGGATGTAACGAACCTTGTTGCTCATCGTAAACAATTCAAAC    787

BSNT_02432___    773 AAGTTGCTGCTGATCAAGGAATCAAGCTGACTTACTTGCCTTACGTTGTA    822
                     |||||||.||||||||||||||||||.|.|||||||||||||||||||||
BPUM_1357___p    788 AAGTTGCAGCTGATCAAGGAATCAAGTTAACTTACTTGCCTTACGTTGTA    837

BSNT_02432___    823 AAAGCTCTTACATCTGCACTGAAAAAATTCCCTGTTTTAAACACGTCAAT    872
                     |||||||||||.|||||..|||||||.|.|||.||..|.|||||.||.||
BPUM_1357___p    838 AAAGCTCTTACTTCTGCTTTGAAAAAGTACCCAGTACTTAACACTTCTAT    887

BSNT_02432___    873 TGACGATAAAACAGATGAAGTCATCCAAAAACATTACTTCAACATCGGTA    922
                     .||.|||||||||||||||||..|.|||||||||||||.|||||||||.|
BPUM_1357___p    888 CGATGATAAAACAGATGAAGTTGTTCAAAAACATTACTACAACATCGGAA    937

BSNT_02432___    923 TCGCTGCTGACACTGAAAAAGGCTTGCTTGTACCGGTTGTGAAAAATGCA    972
                     |.||.|||||.||||||||||||||||||||.||.|||||||||||||||
BPUM_1357___p    938 TTGCAGCTGATACTGAAAAAGGCTTGCTTGTTCCAGTTGTGAAAAATGCA    987

BSNT_02432___    973 GATCGTAAATCTGTCTTTGAAATTTCTGATGAGATCAATGGCCTTGCAAC   1022
                     |||||.|||.|..|.||.|||.|.|||.|.||.|||||.|..||||||||
BPUM_1357___p    988 GATCGCAAAGCAATTTTCGAAGTATCTAACGAAATCAACGAGCTTGCAAC   1037

BSNT_02432___   1023 AAAAGCTCGTGAAGGCAAGCTTGCTCCAGCTGAAATGAAAGGCGCATCTT   1072
                     ||||||.|||||.||.||..|.||||||||||||||||||||.|||||||
BPUM_1357___p   1038 AAAAGCACGTGATGGTAAATTGGCTCCAGCTGAAATGAAAGGTGCATCTT   1087

BSNT_02432___   1073 GCACAATTACAAACATCGGTTCTGCCGGCGGACAATGGTTCACTCCGGTT   1122
                     |||||||.|||||||||||||||||.||.|||||||||||.|||||.|||
BPUM_1357___p   1088 GCACAATCACAAACATCGGTTCTGCTGGTGGACAATGGTTTACTCCAGTT   1137

BSNT_02432___   1123 ATCAACCATCCAGAAGTTGCGATTCTTGGTATCGGACGCATTGCAGAAAA   1172
                     ||||||||.||||||||.|||||.||||||||.||.||.||.||.|||||
BPUM_1357___p   1138 ATCAACCACCCAGAAGTAGCGATCCTTGGTATTGGCCGTATCGCTGAAAA   1187

BSNT_02432___   1173 AGCGATTGTTCGTGATGGCGAAATCGTAGCAGCTCCAGTCTTAGCTCTTT   1222
                     ||||.||||||||||||||||||||||.||||||||||||||||||||||
BPUM_1357___p   1188 AGCGGTTGTTCGTGATGGCGAAATCGTTGCAGCTCCAGTCTTAGCTCTTT   1237

BSNT_02432___   1223 CTCTCAGCTTCGACCACCGTATGATCGACGGAGCAACTGCGCAAAATGCA   1272
                     |.||.|||||.|||||||||||||||||||||||.||||||||||||||.
BPUM_1357___p   1238 CCCTAAGCTTTGACCACCGTATGATCGACGGAGCTACTGCGCAAAATGCC   1287

BSNT_02432___   1273 TTAAATCACATCAAGCGTTTACTGAACGATCCACAATTAATTTTAATGGA   1322
                     .|.||.|||||||||||||||.||||.|||||||||||||||||||||||
BPUM_1357___p   1288 CTTAACCACATCAAGCGTTTATTGAATGATCCACAATTAATTTTAATGGA   1337

BSNT_02432___   1323 GGCGTAA   1329
                     |||||||
BPUM_1357___p   1338 GGCGTAA   1344


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