Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02430 and BPUM_1355
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_02430___pdhA.1.24716.seq
# -bsequence dna-align/BPUM_1355___pdhA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02430___pdhA-BPUM_1355___pdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02430___pdhA-BPUM_1355___pdhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02430___pdhA
# 2: BPUM_1355___pdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity: 917/1124 (81.6%)
# Similarity: 917/1124 (81.6%)
# Gaps: 16/1124 ( 1.4%)
# Score: 3718.0
#
#
#=======================================
BSNT_02430___ 1 ATGGCTGCAAAAACGAAAAAAGCTATCGTTGACAGTAAGAAGCAATTTGA 50
||||||||||||||.||||||||.||.|||||.||.||.|||||||||||
BPUM_1355___p 1 ATGGCTGCAAAAACAAAAAAAGCAATTGTTGATAGCAAAAAGCAATTTGA 50
BSNT_02430___ 51 TGCCATTAAAAAGCAGTTCGAAACGTTCCAAATTTTAAATGAAAAGGGAG 100
||||||.|||||||||||.||||||||.|||||||||||.|||||.||.|
BPUM_1355___p 51 TGCCATCAAAAAGCAGTTTGAAACGTTTCAAATTTTAAACGAAAAAGGCG 100
BSNT_02430___ 101 AAGTCGTGAATGAAGCGGCGATGCCTGATTTAACTGATGATCAATTAAAA 150
|||||||.||.||||||||.|||||.|||.|..|.|||||.|||||||||
BPUM_1355___p 101 AAGTCGTAAACGAAGCGGCAATGCCGGATCTCTCAGATGACCAATTAAAA 150
BSNT_02430___ 151 GAGCTAATGCGCCGCATGGTATTTACGCGTGTGCTTGACCAACGCTCTAT 200
||..||||||||||.|||||.|||||.||.||..|.||.|||||.||.||
BPUM_1355___p 151 GAATTAATGCGCCGTATGGTGTTTACACGAGTATTAGATCAACGTTCAAT 200
BSNT_02430___ 201 CTCATTAAACCGTCAAGGACGTCTCGGATTTTACGCTCCTACTGCGGGTC 250
.|||||.|||||||||||||||||.||.||.||.||.||.||.||.||.|
BPUM_1355___p 201 TTCATTGAACCGTCAAGGACGTCTTGGCTTCTATGCGCCAACAGCTGGAC 250
BSNT_02430___ 251 AAGAAGCTTCTCAGATTGCAACGCATTTCGCGCTTGAAAAAGAAGACTTT 300
||||.|||||||||.|||||||.||.||.||.|||||.||||||||.||.
BPUM_1355___p 251 AAGAGGCTTCTCAGCTTGCAACTCACTTTGCACTTGAGAAAGAAGATTTC 300
BSNT_02430___ 301 GTTCTTCCTGGATACCGTGATGTGCCTCAGTTAATTTGGCACGGCCTTCC 350
.|||||||.|||||.||||||||.||.||.|||||.|||||.||||||||
BPUM_1355___p 301 ATTCTTCCAGGATATCGTGATGTACCACAATTAATCTGGCATGGCCTTCC 350
BSNT_02430___ 351 ATTATATCAAGCGTTTCTT-TTCTCTCGCGGACATTTCAGAGGAAACCAA 399
||||....||||| ||||| ||||||||.|||||.||....||.||||||
BPUM_1355___p 351 ATTAACAAAAGCG-TTCTTGTTCTCTCGTGGACACTTTGTTGGTAACCAA 399
BSNT_02430___ 400 ATGCCTGATGATGTGAATGCCCTTTCTCCACAAATCATTATCGGTGCTCA 449
||||||||.|||||..||||.|||||.||||||||||||||||||||.||
BPUM_1355___p 400 ATGCCTGAAGATGTATATGCACTTTCACCACAAATCATTATCGGTGCACA 449
BSNT_02430___ 450 ATACATTCAAACGGCCGGTGTTGCGCTAGGTATTAAAAAACGCGGTAAGA 499
|..|||||||.|.||.|||||.||.||.|||.|.|||||.||||||||.|
BPUM_1355___p 450 AATCATTCAAGCTGCTGGTGTAGCTCTTGGTTTGAAAAAGCGCGGTAAAA 499
BSNT_02430___ 500 AAGCTGTCGCAATCACTTACACTGGTGACGGCGGAGCTTCTCAAGGGGAC 549
|.|||||.||||||||||||||||||||.|||||||||||.|||||.||.
BPUM_1355___p 500 ATGCTGTTGCAATCACTTACACTGGTGATGGCGGAGCTTCACAAGGTGAT 549
BSNT_02430___ 550 TTCTACGAAGGAATTAACTTTGCCGGAGCTTATAAAGCACCTGCAATCTT 599
|||||||||||.||.||||||||.||.|||||.|||||.||.||.||.||
BPUM_1355___p 550 TTCTACGAAGGTATCAACTTTGCAGGGGCTTACAAAGCGCCAGCGATTTT 599
BSNT_02430___ 600 CGTGGTACAAAACAACCGTTACGCGATTTCAACTCCTGTTGAAAAACAAT 649
.||.||.|||||||||.|.||.|||||.||.|||||||||||.||.||||
BPUM_1355___p 600 TGTTGTCCAAAACAACAGATATGCGATCTCTACTCCTGTTGAGAAGCAAT 649
BSNT_02430___ 650 CTGCAGCTGAAACAATTGCACAAAAAGCTGTAGCTGCCGGTATTGTCGGC 699
||||.||..|||||||||||||||||||.|..||.||.|||||.||.|||
BPUM_1355___p 650 CTGCTGCGCAAACAATTGCACAAAAAGCGGCTGCAGCTGGTATCGTAGGC 699
BSNT_02430___ 700 GTACAAGTAGACGGAATGGATCCGCTTGCTGTATACGCAGCAACTGCTGA 749
||||||||.|||||.||||||.|..|.||||||||.||||||||||||||
BPUM_1355___p 700 GTACAAGTTGACGGTATGGATGCATTAGCTGTATATGCAGCAACTGCTGA 749
BSNT_02430___ 750 AGCACGCGAGCGCGCAATCAACGGCGAAGGTCCAACACTAATTGAAACAC 799
|||.||.|||||.||..|.||.|||||||||||||||.||||||||||.|
BPUM_1355___p 750 AGCTCGTGAGCGTGCTGTTAATGGCGAAGGTCCAACATTAATTGAAACTC 799
BSNT_02430___ 800 TTACATTCCGTTATGGCCCGCACACAATGGCTGGTGACGATCCTACTAAA 849
|||||||||||||.|||||.||.||||||||||||||||||||.||.|.|
BPUM_1355___p 800 TTACATTCCGTTACGGCCCTCATACAATGGCTGGTGACGATCCAACAAGA 849
BSNT_02430___ 850 TATCGTACAAAAGAA-ATCGAAAATGAGTGGGAACAAAAAGATCCGCTTG 898
||||||||||||||| || |||||.||||||||.|||||||||||..|.|
BPUM_1355___p 850 TATCGTACAAAAGAAGAT-GAAAACGAGTGGGAGCAAAAAGATCCATTAG 898
BSNT_02430___ 899 TACGTTTCCGTGCGTTCCTTGAAAACAAAGGCTTATGGTCTGAAGAAGAA 948
||||.|.|||....|||.|.||||||||||||.|||||||||||||||||
BPUM_1355___p 899 TACGCTACCGCAAATTCTTGGAAAACAAAGGCCTATGGTCTGAAGAAGAA 948
BSNT_02430___ 949 GAAGCA-AAAGTGATTGAGGATGCGAAAGAAGAAATTAAGCAAGCGATCA 997
| ||.| |||||.||.||.|||||.||||||.||||.||.||||||||||
BPUM_1355___p 949 G-AGAATAAAGTCATCGAAGATGCAAAAGAACAAATCAAACAAGCGATCA 997
BSNT_02430___ 998 AAAAAGCTGATGCTGAACCGAAGCAAAAAGTAACTGA-TTTAATGAAAAT 1046
||.|||||||.|...|.||.|||||||||||.||||| ||.|.||||||
BPUM_1355___p 998 AAGAAGCTGACGAACAGCCTAAGCAAAAAGTCACTGACTTGATTGAAAA- 1046
BSNT_02430___ 1047 CATGTACGA----AAAAATGCCTCACAACCTTGAGGAGCAATTTGAAATT 1092
||||||||| ||| ||...||||.|.|..||.||..||||||||
BPUM_1355___p 1047 CATGTACGATGTGAAA----CCATTCAACTTAGTTGAACAGCTTGAAATT 1092
BSNT_02430___ 1093 TATACACAGAAGGAGTCGAAGTAA 1116
||.|.|||||||||||||||||||
BPUM_1355___p 1093 TACAAACAGAAGGAGTCGAAGTAA 1116
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