Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02422 and BPUM_1351

See Amino acid alignment / Visit BSNT_02422 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_02422___ykrA.1.24716.seq
#    -bsequence dna-align/BPUM_1351___ykrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02422___ykrA-BPUM_1351___ykrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02422___ykrA-BPUM_1351___ykrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02422___ykrA
# 2: BPUM_1351___ykrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     524/837 (62.6%)
# Similarity:   524/837 (62.6%)
# Gaps:         120/837 (14.3%)
# Score: 1465.0
# 
#
#=======================================

BSNT_02422___      1 ATGGATTCTAAATTAATCTTTTTTGATATTGACGGCACAATATATGATCA     50
                     |||.||...|||.|.|||||.||||||||.||.||.||..||||||||||
BPUM_1351___y      1 ATGAATAAAAAAGTCATCTTCTTTGATATCGATGGTACTTTATATGATCA     50

BSNT_02422___     51 TGATAAGAATATACCGGAAAGTACGAGAAAAACCGTGGCGGAGCTG----     96
                     ||||||.||.|||||.|||...|||    ||||       ||||.|    
BPUM_1351___y     51 TGATAAAAAGATACCTGAATCAACG----AAAC-------GAGCGGTTCA     89

BSNT_02422___     97 ------------CAGCGCCAAGGGCATCATGTGTTTATTGCCAGC-GGCC    133
                                 .|     ||||.||||||.|.||.|||| ||.| ||.|
BPUM_1351___y     90 TTTATTAAAAGAAA-----AAGGCCATCATCTCTTCATTG-CATCTGGGC    133

BSNT_02422___    134 GGTCTCCATTTTTGGTTAAGCCGATTTTGGAGGAGCT-GGGCATCCACTC    182
                     |.||.||.|||||..|||||||.|||||.|||||..| |||| |..||||
BPUM_1351___y    134 GTTCGCCTTTTTTAATTAAGCCTATTTTAGAGGAATTAGGGC-TTGACTC    182

BSNT_02422___    183 ATTTATTTCCTACAATGGACAGTTTGTTGTCTTTGAAAATCAAGTGATTT    232
                     .||||||.|.||.||.||.||||.|||..|.|.|||.....||||.||||
BPUM_1351___y    183 CTTTATTGCTTATAACGGTCAGTATGTCATGTATGAGGGAGAAGTCATTT    232

BSNT_02422___    233 ATAAAAATCCGCTGCCTGAAAATGCA----ATCAGGCGA----TTATTAA    274
                     |....||||||    ||.|||.||.|    ||  ||.||    ||||.||
BPUM_1351___y    233 ACGGCAATCCG----CTTAAACTGGAGCTGAT--GGAGAAAATTTATGAA    276

BSNT_02422___    275 AGCAGGCGGATGAAGGCAAG--CATCCTGTTGTGTTTATGGCTGAGGACA    322
                     |  .|||.|||  .|.||||  |||||..||||.||.||||..||..|..
BPUM_1351___y    277 A--CGGCAGAT--CGTCAAGATCATCCGCTTGTTTTCATGGGGGAAAAAG    322

BSNT_02422___    323 CGATGAAAGCGACTGTTGCGGATCACCC------CCATGTTCTCGAGGGA    366
                     ||.||||.||..||||..|..||||.||      ||||      |||||.
BPUM_1351___y    323 CGCTGAAGGCTTCTGTGCCAAATCATCCGTTTATCCAT------GAGGGG    366

BSNT_02422___    367 ATCGGCAGCCTTAAAACAGATTATCCAGAGACCGATGACCTTT-------    409
                     ||.||.|..||.||||.|.|..||||.|| ||  ||||  |||       
BPUM_1351___y    367 ATTGGGACTCTAAAAATAAAGCATCCTGA-AC--ATGA--TTTGTCTTAC    411

BSNT_02422___    410 TTTATGAAGGAAAAGAAATTTTTCAGCTTCTTTTATTTTGTCAGGATGAA    459
                     ||||  |||.|||.||.||||||||..|.||.|||||.|||.|||.||||
BPUM_1351___y    412 TTTA--AAGAAAACGAGATTTTTCAAATACTGTTATTCTGTAAGGCTGAA    459

BSNT_02422___    460 GAAGAA--AAAGCTTATGCCGCTTTTCC-----TGAGTTTGATCTAGTTC    502
                     ||.|||  .|||  ||.|..||.||  |     .||..|||||||.||..
BPUM_1351___y    460 GAGGAAGTCAAG--TACGAGGCGTT--CAGCGAAGAAATTGATCTTGTCA    505

BSNT_02422___    503 GCTGGCATGAGCTATCGACTGATGTTCTGCCGCACGGAGGTTCGAAGGCA    552
                     |.|||||.|||||.||.||.|||||..||||..|.||.||||||||.||.
BPUM_1351___y    506 GGTGGCACGAGCTGTCAACAGATGTCGTGCCAAAGGGCGGTTCGAAAGCT    555

BSNT_02422___    553 GAAGGAATCAAAAAAGTGATTGAGCGTCTTCCGTTTGATATCGGC-----    597
                     |||||.||.|||..|||.||.||..|.||.||.|..||     .|     
BPUM_1351___y    556 GAAGGCATTAAACGAGTTATCGAAAGACTACCTTACGA-----ACAAAAG    600

BSNT_02422___    598 GATACATATGCTTTCGGCGACGGATTAAATGATCTGCAAATGATTGAATA    647
                     |||||...|||.||.||.|||||..|.||.||||...|.||||||..||.
BPUM_1351___y    601 GATACCGTTGCCTTTGGAGACGGTCTGAACGATCGAGAGATGATTTCATT    650

BSNT_02422___    648 TGTAGGGACAGGCGTTGCTATGGGAAATGCTGTTCCCGAACTGAAAGAAA    697
                     ||..||.|||||.||.||.||||||||||||||...||||.|.||.||..
BPUM_1351___y    651 TGCTGGTACAGGAGTCGCCATGGGAAATGCTGTGAACGAATTAAAGGATT    700

BSNT_02422___    698 TCGCGGACTTTGTAACAAAGCCGGTGGACGAGGATGGAATTGCAT---AC    744
                     |.||.||.|||||.||||||||.||.||.||.||.||.||   ||   ||
BPUM_1351___y    701 TGGCTGATTTTGTGACAAAGCCAGTAGATGAAGACGGTAT---ATTCCAC    747

BSNT_02422___    745 GCTGCCAAAGAAT----TGGGCCT--TTTAA-AATAA    774
                     |    ||..||.|    |.||.||  ||.|| |||||
BPUM_1351___y    748 G----CAGTGACTCATCTAGGTCTGATTGAAGAATAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02422 and BPUM_1351

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
