Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02420 and BPUM_1350

See Amino acid alignment / Visit BSNT_02420 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_02420___ykzG.1.24716.seq
#    -bsequence dna-align/BPUM_1350___ykzG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02420___ykzG-BPUM_1350___ykzG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02420___ykzG-BPUM_1350___ykzG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02420___ykzG
# 2: BPUM_1350___ykzG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 217
# Identity:     160/217 (73.7%)
# Similarity:   160/217 (73.7%)
# Gaps:          14/217 ( 6.5%)
# Score: 564.0
# 
#
#=======================================

BSNT_02420___      1 ATGATTTATAAGGTATTTTATCAAG--AGAAGGCTGAC-GAAGTACCTGT     47
                     |||||.|||||||||||||.|||.|  ||.|  || || ||.||||||||
BPUM_1350___y      1 ATGATATATAAGGTATTTTTTCAGGCAAGTA--CT-ACTGAGGTACCTGT     47

BSNT_02420___     48 TCGGGAAAAGACAGATTCACTTTATATTGAAGGCGTATCTGAGCGTGACG     97
                     ..|.|||.|.|||||||||||.||..||||||..||.|||||..|.||||
BPUM_1350___y     48 AAGAGAACACACAGATTCACTATACGTTGAAGCAGTTTCTGAAAGAGACG     97

BSNT_02420___     98 TCAGAAC----AAAGCTGAAAGAAAAGAAATTTAATATTGAGTTTATTAC    143
                     |    ||    .|||.|||||.||.|.|..|..||.|||||.||.|||..
BPUM_1350___y     98 T----ACGCGATAAGTTGAAAAAACATAGCTACAACATTGAATTCATTCA    143

BSNT_02420___    144 ACCTGTTGATGGTGCATTCTTAGAATATGAACAACAGAGCGAAAATTTTA    193
                     ||||||.||.|||||.||.|||||.|||||||.|.|.||.||||||||||
BPUM_1350___y    144 ACCTGTAGACGGTGCTTTTTTAGACTATGAACGAGAAAGTGAAAATTTTA    193

BSNT_02420___    194 AAGTATTGGAGTTATGA    210
                     |||||||||||.|||||
BPUM_1350___y    194 AAGTATTGGAGCTATGA    210


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.