Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02418 and BPUM_1348
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_02418___adeC.1.24716.seq
# -bsequence dna-align/BPUM_1348___adeC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02418___adeC-BPUM_1348___adeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02418___adeC-BPUM_1348___adeC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02418___adeC
# 2: BPUM_1348___adeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1869
# Identity: 1200/1869 (64.2%)
# Similarity: 1200/1869 (64.2%)
# Gaps: 273/1869 (14.6%)
# Score: 3559.0
#
#
#=======================================
BSNT_02418___ 1 TTGAATAAAGAAGCGCT----AG---TCAA-------TAGGCTGAATGCT 36
|||.||||.|| ||| || |||| |||
BPUM_1348___a 1 TTGGATAAGGA---GCTTTTCAGACATCAAATTGAGGTAG---------- 37
BSNT_02418___ 37 TCAGCCAAAAGACAAAAAGCTGATATCGTCATTAAAAACGGAAAAATCAT 86
||||.||.|||.|||||||.|...||||.||||||.|.|..|||.||||
BPUM_1348___a 38 -CAGCAAAGAGAAAAAAAGCAGCCCTCGTAATTAAACATGCGAAAGTCAT 86
BSNT_02418___ 87 GGACGTATATAATCAAGAATGGATATATGAAGATATTGCGATTACAGATG 136
|||.||.|.|||.||.|||||||||.|.|.||||.|.||..||..|.|||
BPUM_1348___a 87 GGATGTGTTTAACCAGGAATGGATAGACGCAGATGTCGCTGTTGAAAATG 136
BSNT_02418___ 137 GAGTTATTGTAGGCCTCGGTGAGTATGAAGGCGAAAATATCA-----TTG 181
||...||.||.||..|.||.|||||.||.||.||| || |||
BPUM_1348___a 137 GACAAATCGTCGGGATAGGAGAGTACGAGGGAGAA-----CAGGAGCTTG 181
BSNT_02418___ 182 ATGCAGAGGGACAAATGATTGTTCCGGGTTTTATTGATGGACATGTACAT 231
||||||..||.||||||.||||.||.||||||||||||||.||.||.|||
BPUM_1348___a 182 ATGCAGTAGGTCAAATGCTTGTGCCTGGTTTTATTGATGGCCACGTTCAT 231
BSNT_02418___ 232 ATTGAGTCGTCAATGGTTACACCGATTGAGTTCGCTAAAGCAGT-GTTGC 280
||.|||||.||.||||||||.||....||.|||.|.|||||.|| ||| |
BPUM_1348___a 232 ATCGAGTCTTCTATGGTTACCCCTGCCGAATTCTCCAAAGCTGTCGTT-C 280
BSNT_02418___ 281 CTCATGGCGTGACGACGGTTGTTACAGATCCGCATGAAATCGCGAATGTG 330
||||.||.|||||.||.||.||.||||||||||||||||||||.||||||
BPUM_1348___a 281 CTCACGGTGTGACAACTGTCGTAACAGATCCGCATGAAATCGCCAATGTG 330
BSNT_02418___ 331 TCTGGTGAAAAAGGGAT-TGTGTTTATGATTGAACAAGCTCGGCATACAC 379
||.|||..||.|||.|| .|| ||||||.|.|||.|||| |.|.|.|
BPUM_1348___a 331 TCAGGTATAACAGGCATCCGT-TTTATGCTGGAAGAAGC---GAAAAAA- 375
BSNT_02418___ 380 CGCTG-----AATATCCATTTTATGCTTCCTTCCAGTGTGCCTGCCGCAA 424
|||| .||||..||||.|||||.||||||.||||.||.||.|..|
BPUM_1348___a 376 -GCTGCCTTACATATTTATTTCATGCTGCCTTCCTGTGTACCGGCAGTCA 424
BSNT_02418___ 425 GTTTTGAGCGATCAGGCGCAATTCTCAAAGCTGCCGATCTCAAGCCTTTT 474
|||||||.||||||||.||.|...|.|||||....|||.|.||||||.||
BPUM_1348___a 425 GTTTTGAACGATCAGGTGCTACATTAAAAGCGAAAGATTTAAAGCCTCTT 474
BSNT_02418___ 475 TAT--GGAGAAGAAGAAGTATTAGGGCTGGCTGAAGTTATGGATTATGTG 522
||| .|||||| |||||..|.||.||.||.||.||.|||||.|| ||
BPUM_1348___a 475 TATCAAGAGAAG--GAAGTGCTTGGTCTTGCAGAGGTGATGGACTA--TG 520
BSNT_02418___ 523 TCG--GTTCAGCAGGCTGAAGAAGACATGGTTCAGAAACTGCTCGATGCC 570
||| ||..|||||||.||||||||.|||.||||.||.|||||.|||||
BPUM_1348___a 521 TCGGTGTGGAGCAGGCAGAAGAAGATATGCTTCAAAAGCTGCTTGATGC- 569
BSNT_02418___ 571 CGTGTGGCAGGA----AAAAGGATAGACGGTCATTTAGCTGGTTTATCAA 616
|...||.|| |||..|||.||.||.|||.||||.||.|| ||
BPUM_1348___a 570 ---GCAACACGAGAATAAACTGATTGATGGCCATCTAGCAGGCTT---AA 613
BSNT_02418___ 617 CAGACC---TCATTAACATTTACAGAACCGCCTTTGTCTTAAAC-GACCA 662
|||||| |.||.|||.|.|||.|.||.||...|||| .|||| |||||
BPUM_1348___a 614 CAGACCGATTAATCAACGTCTACCGGACAGCGAGTGTC-CAAACAGACCA 662
BSNT_02418___ 663 TGAAGT---AACATCGAAGGAAGAAGCCCTTAATCGTATCAGAAGAGGCA 709
|||.|| ||||.|..|| |||||||||.|.|||.|.|.||||||.|
BPUM_1348___a 663 TGAGGTGACAACAGCACAG---GAAGCCCTTGAACGTGTAAAAAGAGGTA 709
BSNT_02418___ 710 TGTATGTCATGATGCGTGAAGGATCAGTCGCCAAAAACACGCTCAATGTG 759
|||||||.|||.||.|.||||||||.||.|||||||||..|...|||||.
BPUM_1348___a 710 TGTATGTGATGCTGAGAGAAGGATCTGTTGCCAAAAACGTGAAAAATGTT 759
BSNT_02418___ 760 CTTCCGGCGGTGAATGAAAAGAACGCACGCCGTTTCTTTTTTTGTACGGA 809
.|.||.||.||.|||||||||||.||.||.||.||.||.||||||||.||
BPUM_1348___a 760 TTACCCGCTGTCAATGAAAAGAATGCGCGACGCTTTTTCTTTTGTACAGA 809
BSNT_02418___ 810 TGATAAGCATGTGGATGATTTATTGTCAGAGGGAAGTGTAAACCATCAGG 859
||||||.|||.||||||||.||.||.||.||||||||.|..|..|.||.|
BPUM_1348___a 810 TGATAAACATTTGGATGATCTAATGGCACAGGGAAGTATTGATGAGCAAG 859
BSNT_02418___ 860 TGAAAATGGCGATTCAAGCTGGACTTGATCCGTTTTTAGCCTATCAATTA 909
|....|||.|.||..|||..|||.|.|||||.||||||||.||||||.|.
BPUM_1348___a 860 TACGGATGTCCATAAAAGAAGGATTAGATCCATTTTTAGCTTATCAAATG 909
BSNT_02418___ 910 GGAAGCCTCAATGCGGCCGAATGCTACGG-ATTAGATACAAAGGGAGCGA 958
||||||.|.|||||.||.||.||.|..|| .||| |.|||||||||||.|
BPUM_1348___a 910 GGAAGCTTAAATGCCGCAGAGTGTTTTGGTCTTA-AAACAAAGGGAGCCA 958
BSNT_02418___ 959 TTGCCCCGGGTTATGACGCTGATTTACTCTTTGTATCTGATTTGGAAAAT 1008
||||.||.||.|||||.||||||||..|..|.||.||.|
BPUM_1348___a 959 TTGCACCAGGCTATGATGCTGATTTTATGCTCGTTTCAG----------- 997
BSNT_02418___ 1009 GTCACTGTCACAATGACGATGGTAAAAGGGCA------------GACT-- 1044
|||.|||..|||..|||..||.|||.|.| ||.|
BPUM_1348___a 998 ---ACTTTCATCATGTAGATATTACAAGCGTATTTATCGCAGGTGAATTG 1044
BSNT_02418___ 1045 GTTG--CTGAA--GACAGCA-AAGCGGTCTATC---AGGATCATGCTTCA 1086
|||| |.||| ||.||.| ||||.|..|.|| |.||||
BPUM_1348___a 1045 GTTGCACAGAACGGAGAGTACAAGCCGAGTGTCGAAAAGATC-------- 1086
BSNT_02418___ 1087 ACTGCAGCACCAGATCAGGCACTGCTTGAT-----TCTGTT-AAGC--TT 1128
||||| || ||.|.||.|.|| |||||| |.|| |.
BPUM_1348___a 1087 ------GCACC-GA----GCCCAGCATTATTACAATCTGTTCATGCCATA 1125
BSNT_02418___ 1129 GCTGCTCCTCTTAACAAACAGGA----TTTTCA-TATGCCAAT--CGATT 1171
|.||.|| ||.|||| .||.|| || ||.|| ||..|
BPUM_1348___a 1126 GATGTTC---------AAGAGGAAGACATTGCACTA--CCTATTACGGGT 1164
BSNT_02418___ 1172 CAGAGCAGCAAATCAATGTCATTCAAATCATACCAAATCAGCTTGAAACA 1221
||.|||||.||.||||||||.|..||.||.||.|||||||||||||||
BPUM_1348___a 1165 --GATCAGCATATGAATGTCATCCGTATTATTCCGAATCAGCTTGAAACA 1212
BSNT_02418___ 1222 AGATTAGTACAAGT-TCCGGCTCCT-----GATGCCCGCG--AATTT--G 1261
|..||||.|||||| | ||||| .|||..|| | ||||| .
BPUM_1348___a 1213 AAGTTAGAACAAGTCT----CTCCTTCAGAAATGAACG-GACAATTTACA 1257
BSNT_02418___ 1262 AGCCTGACACTG--AGTTTGATTTGTTAAAGAT--TGCAGTTGTCGAGCG 1307
|| |||.||.| || .|||.|.|||||.|| ||| ||||.||.||
BPUM_1348___a 1258 AG--TGATACAGGCAG--AGATGTATTAAAAATGGTGC--TTGTTGAACG 1301
BSNT_02418___ 1308 GCATAAAGGAT----TGAAAGAAACCGGACTTGGTG------TTGTGAAA 1347
.|||.||||.| ||||| |.|||| ||||.|..
BPUM_1348___a 1302 TCATCAAGGTTTATCTGAAA----------TGGGTGTAGGAATTGTCAGC 1341
BSNT_02418___ 1348 GGTTTTGGATTCAAGAGCGGAGCGATTGCCACAACCATTTCACACGACTC 1397
||.||.||..||||....||.||.|||||.|||||..||.||||.||.||
BPUM_1348___a 1342 GGCTTCGGCATCAAACAAGGTGCAATTGCAACAACGGTTGCACATGATTC 1391
BSNT_02418___ 1398 CCATAATATTATTGCTGTCGGAACGAATGATGAGGATAT------CGCG- 1440
.|||||..|.|||||.|||||.||.|||||||..||||| .|||
BPUM_1348___a 1392 ACATAACTTAATTGCAGTCGGCACAAATGATGCTGATATTATCAAAGCGA 1441
BSNT_02418___ 1441 --GCGGCAGTTAATAAGCTGCAGGAAATTGGCGGAGGATTAACGATTATA 1488
|.||| ||||| |||..||| |||||.||.||.||..||.|.
BPUM_1348___a 1442 TTGAGGC-GTTAA-AAGAAGCA-------GGCGGCGGTTTGACTGTTGTT 1482
BSNT_02418___ 1489 AAAAATGGGGAAG--AGCTCCATTCAGTACCGTTGCCGATTGCAGGGTTA 1536
|||.| ||||.|| | ||.|||.|..|.||.||.||.||..|.||.||.
BPUM_1348___a 1483 AAAGA-GGGGCAGTCA-CTTCATACGCTGCCATTACCAATCTCTGGTTTG 1530
BSNT_02418___ 1537 TTATCCGACCAATCTGCAGAGCAAGTGAATCAAAGCTTGCTGACGCTTCA 1586
||.||.||.||..|.|||.|.|..||.|||.|||||.|.|...|.|||||
BPUM_1348___a 1531 TTGTCAGATCAGCCGGCACATCTCGTCAATGAAAGCCTTCATTCACTTCA 1580
BSNT_02418___ 1587 TGA-----TAAA-----------TTGCCGTTAATCGGTTTCACAGGCGGA 1620
||| |||| ||.|| ||| ||
BPUM_1348___a 1581 TGAAGCGCTAAAAGAAACTGGCTTTTCC-TTA----------------GA 1613
BSNT_02418___ 1621 -TTTAATCCATTTTTGACATTGTCGTTTTTAGCTTTGCCTGTCATTCCTG 1669
||||||||.||||||||..|.||.||.||.||..|.||.||||||||||
BPUM_1348___a 1614 CTTTAATCCGTTTTTGACGCTTTCTTTCTTGGCACTTCCAGTCATTCCTG 1663
BSNT_02418___ 1670 ATATTAAAATGACGACTACGGGATTATTCGATGT-AAAATCATTTCAACA 1718
||.|.||||||||.||.|..||.|||||.||||| |.||.| |||||.||
BPUM_1348___a 1664 ATGTGAAAATGACAACAAAAGGCTTATTTGATGTCAGAAAC-TTTCAGCA 1712
BSNT_02418___ 1719 CATATCACTGCAATAA--- 1734
|.|..|..|.||||.|
BPUM_1348___a 1713 CCTCCCTATTCAATCATAA 1731
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